RNA id: TU176779


Basic Information

Item Value
RNA id TU176779
length 243
lncRNA type intronic
GC content 0.33
exon number 3
gene id G154527
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50478780 ~ 50487600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaactgacaggttttactagtagtaaaaagtagaagaGAACATTTAACCTTCTTTAACAGGTTTCACTAGTAGCAAAAAGTAgtagacaaaatgtaactgacaggtttctctAGTAGTAAagagtagaagacaaaatgtaactgacaggtttctctagtagtaaaaagtagaagacaaaatgtaactgacaggtttcactagtagtaaaaagtagaagacaaaatgtaactgacaggtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176760 lncRNA upstream 26217 50416268 ~ 50452563 (+) True G154514
TU176730 lncRNA upstream 31777 50380336 ~ 50447003 (+) True G154487
TU176763 lncRNA upstream 34227 50442005 ~ 50444553 (+) False G154517
TU176765 lncRNA upstream 34476 50443435 ~ 50444304 (+) True G154517
TU176766 lncRNA upstream 35410 50442005 ~ 50443370 (+) False G154517
TU176803 lncRNA downstream 21681 50509281 ~ 50509791 (+) True G154548
TU176834 lncRNA downstream 75105 50562705 ~ 50562989 (+) True G154579
TU176835 lncRNA downstream 76283 50563883 ~ 50564185 (+) True G154580
TU176837 lncRNA downstream 79223 50566823 ~ 50567119 (+) True G154582
TU176838 lncRNA downstream 80077 50567677 ~ 50567985 (+) True G154583
XM_036950046.1 mRNA upstream 8655 50460347 ~ 50470125 (+) False LOC110515922
XM_036950048.1 mRNA upstream 8655 50460929 ~ 50470125 (+) True LOC110515922
XM_036950031.1 mRNA upstream 45224 50424133 ~ 50433556 (+) False LOC110510939
XM_036950037.1 mRNA upstream 45224 50424626 ~ 50433556 (+) True LOC110510939
XM_021564422.2 mRNA upstream 242554 50223738 ~ 50236226 (+) True LOC110491046
XM_021564446.2 mRNA downstream 87816 50575416 ~ 50579663 (+) False zgc:56585
XM_021564453.2 mRNA downstream 87816 50575416 ~ 50580216 (+) True zgc:56585
XR_002468779.2 mRNA downstream 191214 50678814 ~ 50689147 (+) True LOC110491108
XM_036950140.1 mRNA downstream 229980 50717580 ~ 50884089 (+) False LOC110491126
XM_036950156.1 mRNA downstream 229981 50717581 ~ 50884089 (+) False LOC110491126
TU176287 other upstream 378306 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 1921094 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 2931201 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3493554 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 4986401 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 677815 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 834196 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 924666 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 933247 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 1328910 51816510 ~ 51824182 (+) False G156000