RNA id: TU177398


Basic Information

Item Value
RNA id TU177398
length 1129
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G155074
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50589951 ~ 50592550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcatttctatgttttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggttgcactgtttgtttgtgggtgattgtctatgtcagtggcttgtgtcagcacaggtctattTTGTAGCTTCATGGTCGTcatatgtttattgttttgtatgcagtgtcagtattttctttattaaagatttaccatggacacttaccacgaggcattttggtcttccgatccatctcgcctctcctcttcagatgaagaggaggacgaccatGACACAGGGTAAATGAAAAAGACCCAAATAAAATGCATGTGAGAAGATGTGGTCAAAGTATCAAACTTTGCTGGTTTATTAaaatttttacatttttgttgtgttaaaacaaTCAGGTCTTCGCAACATTTGCCATAACTAGTAAGCCTTACATCCTGGATGTATATGTGCTATAAAATATGCACCTGGGAACACATGGGAGGGGTGGGAACACATGTCCTTCGaagtgattgtggactacaggacaaggaggaccgagcacatccccattctcatcaacggggctgtagtggagcaggttgagagcttcaagttccttggtctccacatcaccaacaaactagaatggtccaaacacaccaagacagtcgtgaagagggcatgacaaagcccattccccctcaggaaattcaaaagatttggcaagggtcctcagatcctcaaagggttctacagctgcaacatcgagagcattctgactggttgcatcactgcctggtacggcagtTGCTCTgcttcttttacgctgctgctactctctgtttatgcatatatgatagtcactttaactatacattcatgtacatactacctcaattggcccgaccaaccagtgcccctgcacattggctatctgcattgtgtcccgccaccccctcttttacgctactgctactctctgttcatatATCACTTTGaccatatgtacatactacctcaatcagcctgactaaccggtgtctgtatgtagcctcgctactgtatatagcctcactactgttattttttactgtttttatttctttacctacctattgttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177397 lncRNA downstream 2011 50587400 ~ 50587940 (-) True G155073
TU177394 lncRNA downstream 14673 50574961 ~ 50575278 (-) True G155070
TU177388 lncRNA downstream 19384 50570366 ~ 50570567 (-) True G155064
TU177384 lncRNA downstream 26924 50562776 ~ 50563027 (-) True G155060
TU177366 lncRNA downstream 65471 50524216 ~ 50524480 (-) True G155042
TU177399 lncRNA upstream 1337 50593887 ~ 50594414 (-) True G155075
TU177400 lncRNA upstream 3602 50596152 ~ 50596412 (-) True G155076
TU177401 lncRNA upstream 4330 50596880 ~ 50597105 (-) True G155077
TU177402 lncRNA upstream 4953 50597503 ~ 50597796 (-) True G155078
TU177403 lncRNA upstream 9289 50601839 ~ 50602052 (-) True G155079
XM_036950070.1 mRNA downstream 28644 50474632 ~ 50561307 (-) True LOC110491068
XM_036950051.1 mRNA downstream 28645 50474632 ~ 50561306 (-) False LOC110491068
XM_036950061.1 mRNA downstream 28645 50474632 ~ 50561306 (-) False LOC110491068
XM_036950081.1 mRNA downstream 28647 50474632 ~ 50561304 (-) False LOC110491068
XM_036950111.1 mRNA downstream 53517 50474632 ~ 50536434 (-) False LOC110491068
XM_021564460.2 mRNA upstream 72746 50665296 ~ 50678813 (-) True rbm41
XM_021564533.2 mRNA upstream 314086 50906636 ~ 50954275 (-) False LOC110491182
XM_036950164.1 mRNA upstream 314086 50906636 ~ 50954275 (-) True LOC110491182
XR_002468785.2 mRNA upstream 391582 50984132 ~ 50984985 (-) True LOC110491226
XM_021564589.2 mRNA upstream 449387 51041937 ~ 51050197 (-) False LOC110491241
TU177396 other downstream 8602 50579798 ~ 50581349 (-) True G155072
TU177312 other downstream 137804 50415743 ~ 50452147 (-) True G155003
TU176559 other downstream 432126 50156686 ~ 50157825 (-) True G154338
TU176510 other downstream 482504 50101430 ~ 50107447 (-) False G154300
TU177629 other upstream 378526 50971076 ~ 50971935 (-) True G155281
TU177680 other upstream 447320 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other upstream 447320 51039870 ~ 51049880 (-) True LOC110491241
TU177982 other upstream 819719 51412269 ~ 51417110 (-) False G155610
TU180370 other upstream 2440352 53032902 ~ 53112291 (-) True snx33

Expression Profile