RNA id: TU177007


Basic Information

Item Value
RNA id TU177007
length 1720
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G154740
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50977573 ~ 50979292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaatattttatgtctgttaccactgataacctgaatgaccctagaCAGTTTTGGAAGTctattaagtctatgtctggtaacagtaatgttaatgaatgaccgtcatgtgttttgaaggactctgttgctgtatatgacaaaacggaaatgctgaattgtttcaatgagcactttgtatcatctggtaggctgtttgattcagtgtcctctgtctctgtacaaccctgtgtggatgaaccagtgagagctggtcaaacttttagctttttgccattctcagtgcaggtggtacataaagccctgaaattcttagatcagagaaagcctgcaggtcctgatcttcttgatccctgctttttaaaactggcagctgatttcatagatGAACCATTTACatctctgttcaatctaaccctggaatgtaatgaaattccaaagatctggaaatcagcatttgtcctaccactcttttaaataattataggtcaatctcaaagctgtcacccatggcaaaaatacttgaaacccttgttaGTGAAGAGCTAAAAGAGGTTTTATATATTAACTATATTTCctcaatgtaccaatcgggcttcgGGAAGAAGCATAACACAAACACAGcggccatgaaggttttaaatgatatcactgaagcccttgacaaaaaacagcactgtgtttaactttttattgatctctctaaggcttttgatacagttgatcatgctatactaaggcagagattgttgagtgtaggtctttcagagcatgcagttgcatggtttgctatctatctgtctgatagaactcagtgcactccaTTTGATGGGCTcgtgtctgttaaattgtctgtctgtaatggtgtgccccagggctctgtacttggtcccctcttattcactatttatataaataatttagacaaaaatgtgcaAAATGCGCACCTTCACTTTTAATGCCGTTAtttgttgtgcctcgtctctcaCAAAAGCTTCCCAAaacatgcaaactgctttttatactgttcaacataccttgtgtcaattgaagcttatcctcaatattgacaaaactaaactaatggtgttttctaaagcaagaaatagacctctgaacctttcacctattactacctgtcagggcaatgagatatataaatatcttggaattttaattgatgacggcttctcttttaaattgcatattcaacaacttacaaaacaATTAAAGCATttaattgggattttatttttaggaataaggcctgtttttcttttgaagctagaaggaggctagtatcagctacatttatgcctttactagactatggggatattttatatatgaatgcttccgctcagtgtttgagatcaattgacaccctttaccatggagcATTCAGatgtattttaaactgcaaaacccttacgcaccactgcccTTTATATAcaagggttggctggccttctctagtcaatTGTAGGCTCAGgtactggtatacttttatttacaaagccattttgggtttactaccattttatttgggcatttttattgttcagaaatgtggtgggtactctcttcgttcgctggattTTATCCTGTTAATTGTaccaaatgtccaaactgaatttggtaaaagggcttttatgtatcCCTGTCCGCCATCGGCTTgcaacgccttacaaaatacttttaaactggaaaaacttatcccga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176906 lncRNA upstream 93518 50880389 ~ 50884055 (+) True LOC110491126
TU176911 lncRNA upstream 99978 50807769 ~ 50877595 (+) False LOC110491126
TU176978 lncRNA upstream 102957 50874086 ~ 50874616 (+) True G154715
TU176965 lncRNA upstream 124483 50844726 ~ 50853090 (+) True G154702
TU176912 lncRNA upstream 139013 50837797 ~ 50838560 (+) True G154655
TU177070 lncRNA downstream 4842 50984134 ~ 50984935 (+) True G154776
TU177090 lncRNA downstream 39348 51018640 ~ 51018990 (+) True G154796
TU177059 lncRNA downstream 60580 51039872 ~ 51042833 (+) False G154775
TU177063 lncRNA downstream 60580 51039872 ~ 51042833 (+) False G154775
TU177068 lncRNA downstream 62588 51041880 ~ 51042833 (+) False G154775
XM_036950173.1 mRNA upstream 5400 50961986 ~ 50972173 (+) True LOC110491193
XM_021564551.2 mRNA upstream 6211 50960131 ~ 50971362 (+) False LOC110491193
XM_021564543.2 mRNA upstream 6211 50961126 ~ 50971362 (+) False LOC110491193
XM_036950140.1 mRNA upstream 93484 50717580 ~ 50884089 (+) False LOC110491126
XM_036950156.1 mRNA upstream 93484 50717581 ~ 50884089 (+) False LOC110491126
XM_021564562.2 mRNA downstream 3666 50982958 ~ 51008552 (+) False sat2b
XM_036950213.1 mRNA downstream 3666 50982958 ~ 51008552 (+) False sat2b
XM_036950217.1 mRNA downstream 3666 50982958 ~ 51008552 (+) False sat2b
XM_021564569.2 mRNA downstream 3667 50982959 ~ 51008552 (+) True sat2b
XM_036950237.1 mRNA downstream 88199 51067491 ~ 51087131 (+) False LOC110491259
TU176287 other upstream 877099 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2419887 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3429994 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3992347 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 5485194 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 186123 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 342504 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 432974 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 441555 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 837218 51816510 ~ 51824182 (+) False G156000

Expression Profile