RNA id: TU177069


Basic Information

Item Value
RNA id TU177069
length 893
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G154775
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51039872 ~ 51042833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgatcaccgtatgttgtcgaatttcatcccgctaccgggttcggtgcgcagagaggttaaacaaTGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTTCACAGGTGGAAGGTAAGAGCGTACAACAGCAACAGAACAAGGTTTAAACGGCATATCCAACAATGCCTCCTTTTCCGATGCACTCTCCAATGTAGAACCACATCAGCACTTCAGTGCAGACCAATCCATTTCTGAATGCATCCTGTAACAAAAGCATATTGACATTAATCCCAAACAAATACCAGAGTCATATCTAAAAACCAACATGGCAGACAATTCCATATTTCCCAATTGGTTAGGATGTAGGCCTAATGTCTGGTGGATTGCAGCTACTTATTTTGATAATGAcgggactaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctagctaacaatttcaaaactactaccttatagacacaagtgtaaggggataaagaatatgtacataaagatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtattgagtgcagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaagatgcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177090 lncRNA upstream 22890 51018640 ~ 51018990 (+) True G154796
TU177070 lncRNA upstream 56945 50984134 ~ 50984935 (+) True G154776
TU177007 lncRNA upstream 62588 50977573 ~ 50979292 (+) True G154740
TU176906 lncRNA upstream 157825 50880389 ~ 50884055 (+) True LOC110491126
TU176978 lncRNA upstream 167264 50874086 ~ 50874616 (+) True G154715
TU177083 lncRNA downstream 2809 51045642 ~ 51062055 (+) True G154789
TU177117 lncRNA downstream 46934 51089767 ~ 51090123 (+) True G154823
TU177119 lncRNA downstream 47656 51090489 ~ 51090717 (+) True G154825
TU177123 lncRNA downstream 55388 51098221 ~ 51098441 (+) True G154829
TU177130 lncRNA downstream 65967 51108800 ~ 51109074 (+) True G154836
XM_021564562.2 mRNA upstream 33328 50982958 ~ 51008552 (+) False sat2b
XM_036950213.1 mRNA upstream 33328 50982958 ~ 51008552 (+) False sat2b
XM_036950217.1 mRNA upstream 33328 50982958 ~ 51008552 (+) False sat2b
XM_021564569.2 mRNA upstream 33328 50982959 ~ 51008552 (+) True sat2b
XM_036950173.1 mRNA upstream 69707 50961986 ~ 50972173 (+) True LOC110491193
XM_036950237.1 mRNA downstream 24658 51067491 ~ 51087131 (+) False LOC110491259
XM_036950231.1 mRNA downstream 24659 51067492 ~ 51087131 (+) True LOC110491259
LOC118944166 mRNA downstream 51890 51094723 ~ 51094847 (+) True LOC118944166
XM_036950245.1 mRNA downstream 71374 51114207 ~ 51136900 (+) False LOC110491269
XM_036950241.1 mRNA downstream 71378 51114211 ~ 51136900 (+) True LOC110491269
TU176287 other upstream 941406 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2484194 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3494301 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 4056654 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 5549501 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 122582 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 278963 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 369433 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 378014 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 773677 51816510 ~ 51824182 (+) False G156000