RNA id: TU177117


Basic Information

Item Value
RNA id TU177117
length 357
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G154823
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51089767 ~ 51090123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaatttggtttaaataatgcaaaaacaaagtgttggagaagaaagtaaaagtgcaatatgtgccatgtaaaaaagctaacgtttaagttccttgctcagaacatgagaacatatgaaagctggtggttccttttaacatgagacttcaatattccaaggtaagaggttttaggttgtagttaatatagtatttataggactctttctctctataccatttgtatttcatatacctttgactattggaggttcttataggcactttagtattgccagtgtaacagtatagcttccgtccctctcctcgcccctacctgggctcgaaccaggaacacatcaacaacagccaccctcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177083 lncRNA upstream 27712 51045642 ~ 51062055 (+) True G154789
TU177059 lncRNA upstream 46934 51039872 ~ 51042833 (+) False G154775
TU177063 lncRNA upstream 46934 51039872 ~ 51042833 (+) False G154775
TU177068 lncRNA upstream 46934 51041880 ~ 51042833 (+) False G154775
TU177069 lncRNA upstream 46934 51041880 ~ 51042833 (+) True G154775
TU177119 lncRNA downstream 366 51090489 ~ 51090717 (+) True G154825
TU177123 lncRNA downstream 8098 51098221 ~ 51098441 (+) True G154829
TU177130 lncRNA downstream 18677 51108800 ~ 51109074 (+) True G154836
TU177131 lncRNA downstream 21412 51111535 ~ 51111775 (+) True G154837
TU177111 lncRNA downstream 55413 51145536 ~ 51147897 (+) True G154817
XM_036950237.1 mRNA upstream 2636 51067491 ~ 51087131 (+) False LOC110491259
XM_036950231.1 mRNA upstream 2636 51067492 ~ 51087131 (+) True LOC110491259
XM_021564562.2 mRNA upstream 81215 50982958 ~ 51008552 (+) False sat2b
XM_036950213.1 mRNA upstream 81215 50982958 ~ 51008552 (+) False sat2b
XM_036950217.1 mRNA upstream 81215 50982958 ~ 51008552 (+) False sat2b
LOC118944166 mRNA downstream 4600 51094723 ~ 51094847 (+) True LOC118944166
XM_036950245.1 mRNA downstream 24084 51114207 ~ 51136900 (+) False LOC110491269
XM_036950241.1 mRNA downstream 24088 51114211 ~ 51136900 (+) True LOC110491269
XM_021564639.2 mRNA downstream 143582 51233705 ~ 51236559 (+) True LOC110491287
XM_021564659.2 mRNA downstream 157618 51247741 ~ 51293224 (+) False LOC110491302
TU176287 other upstream 989293 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2532081 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3542188 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 4104541 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 5597388 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 75292 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 231673 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 322143 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 330724 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 726387 51816510 ~ 51824182 (+) False G156000

Expression Profile