RNA id: TU178396


Basic Information

Item Value
RNA id TU178396
length 3651
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G156000
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51816510 ~ 51824182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcatatTACCTTTATTGCACAGAACAATtttaatggattttttttttcatggatttttaaatatattttcatataAAGTTGGCTGGGACTACATGTTCAACATAGTCCtgggtcaaaataaaaaaaggaaCAAGAGAAAGAAATGAGGTTCCCATGAATCTCTGACTCGACCGGGACCAAAAGACTAAGTACAGTTGCCACACTTTGAACAAAGCGAGCATTCATAATCAGCCAGGGAGGGAACCATGGTTTTCAGCAAAACGGATTACTCCAAAGCTGCTTGCTTCAGACCACTCCATGGGTGAAACCATCTGTGTCGATGCACCATCTGCATATTCAGTCCATACTTCCAACCCGTTACTGTGTGTCGTTGTCTGGAATGTCATCCATCATCAATAACATAGCCTTTATCCTGCACATATCCGCAAAGCCCAGCTGTCCACAGTGTGTAGTTGAAAAGATAAGGGCATTcattacacatactgtatatccagGAGGATCAGCAGGAAGTTACTTTTTTAAAATTCTTTACACCCTTTTTTGGGATATCATATAGTAAAATAAACCTGCAAAGGAATTTTTGTATGGGGGTGTGGTTGCGGAGGGTCGAGAAATTCAAACAATAATATTTCTGACAACCAAAGCTCCCTAACATGGGATTAAGTGTTTTACAGGTTGCTGAGCACATTAGTAACAAAGTAGAGCATCCCAACTTTTATTCTCCATAAAAATGTTAAGCACAACATAAGCCCATTATGTAAGACTCTTTAGAGTGCACTGTAACATAATTCAAAAGGCAGCAGATAAACAGATACCAAGGTATTCATGCAATAATATGCAATGGAATATACCAGCAGTTGTTGTCATATAGAGTGTAATCAACAGTAGCATCCAAACATTTTTTTGCTGGATTATCTTCTGAacagagagaagtgtgtgtgtgtgtataatgtgtcaTTTCTGTTATTTGTGTCATTGTTCATTGTTTGCGTATAGACTGTTTAAAAACACCACATCGATTAGGCTGATTTTAGCTCCCCagagaaaaacaaaaataaatagataatataataaaattactgtgccttcagaaagtatttacgcCCCTAGACTTTTtcgacattttgttgtgttacaaagtagggtttaaatggatttaattggCTTTTAAATTTtttccccccatcaatctacacaaaaaataaatacaatttactaatgaaaattaaaaaaaaccaatacttatctaatcaagatgtattagtaggtctaagagctttgcatacctggattgTGGAATATTtgcaaatattattttgaaaattcttcaagctctgtcaagttggttgttgatcattgctagacagatttgtcaagtcttgccatagattttgaggcagatttaagtcaaaactctaagtacgccactcaggaacattcaatgacatcttggtaagcaactcgtaTAGATTtggttttgtgttttaggtttattgttctgctgaaaggttaaCTAGTTTCTAAGTGTATGTTAGAAAGCAgacagaaccaggttttcctctaggattgtgcctgtgcttagctacattccttttctttttatcctgGAAAAACTTTTCAGTCCTTTCTGacgacaagcatacccatattATGATGCAGCCACCCCACGATTGAAAATATTGAGAATGGTACCCAGTGATTCAGGACAAAAATGGAATTCctatgccacattttttgcagtattttgcagttgttgcaaacaggatgcatgttttggaatattgttttattctgtacaggcatcgttcttttcactctgtcatttaggttagtattttgaAGTAACCACAATGTTTTTGAGCCATCCTCAGGTTTgtcatatcacagccattaaactctgttactGTTTTATAATCAccatggcctcatggtgaaatccctgagcggttttcttTCTCTCCGGCAACTCAGTTCGGAAGGAAGTCTGAATCTTTGTAGTACTTGGGTGTAttcatacaccatccaaagcctaacAAAcagcttcaccatgctcaaacggatattcagtgtctgcttcaTTATATTTACCAATCGGTTCCGTTCCTTTGtcaggcattggaaaacttccctggtctttgtggttaaatctgtgcttgaaattcactgctcgactaagggaccttacagacaattgtatgtgtggggtacagagatgggatAGTTATTAacaaatcatgttaaccactattattgcacacagagtgagtgcaTGCAATttattaagcaaatgtttactcatgaacttatttaggcttgccataaaaggGATTGAATACCTTTTTCAATTTGAAATAATTTCTatttgacattatgtggtattatgtgtagatcagtgaccattttatattcaggctgtcacaacaaaatgaggagaaagttaaggggtgtgaatgcACTCTATATTATCATTATATTTTATGAAATATGATAAAATAATGCAATGTTTATGGCCAATAAACATTGTGTGCCACAGTGTCTAGCACAAGAAAACAGAGATAATGAGATCTAATCTTGATaaattaattaatacatttaGAGGGGTTTTGAGAAGAATCATGTTCGAACCAAAAACCGCTATAGAGCAATGACTCAGCAAACCTTATATACAATAAAACTATGCCAACAAAATTACGTATTTGAAACTCCCTTGGTAACAGTTTAAATTAAGTTGCTATTTTACATTTGTAGTAATGCTTCAATTACTCTACTAACAacatcagtaacatgttatagTAATTGTAAAAAGTTGTCTTTGCTTTGTAAATGCATAGTAATGGAATTGTGCATTGTTTGTTATGACACAATAAAGAGTAGACTAAGAAACAGTAACTCAAATACTATACCATTACAATGCAATTACTAAATAATTATGTAACATTGTTACTCCACTAAAAACAATGTGTTTACTAGAGGAATTACATTGCGCTCCACAGGTATAAAaacaacttaatgtaaagtgtacAGTCgtagccaaaagttttgagaatgacacaaatattaattttcacaaagtctactGCCTCAgcttgtatgatggcaatttgcatatactccagaatgttatgaagagtgatcagatgaattgcaaagtccctctttgccatgcaaatgaactgaatccccaaaaaacatttccactgcatctcagccctgccacaaaaggaccagctgacatcatgtcagggattctctcgttaacacaggtgtgagtgttgacgaggacaaagaaaaccccacaaattctgacaaactccaagcattgattatgcaagaatgggctgtcatcagtcaggatgtggcccagaagttaattgacagcatgccagggcagattgcagaggacttgaaaaagaagggtcaacactgcaaatattgactctgcatcaacttcatgcaattgtcaataaaaggctttgacacttatgaaatactTGTAactatacttcagtattccataaagacaatgaagcagcaaactttgtggaaaataatatttctgtaattctcaaaactttcgGCCACGACTGTAGTGAATGATATGGATGAGATACAGAacgcatatatacacacatacatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178228 lncRNA upstream 223409 51592842 ~ 51593164 (+) True G155845
TU177853 lncRNA upstream 314576 51430866 ~ 51501997 (+) True G155492
TU177852 lncRNA upstream 405710 51410337 ~ 51410863 (+) True G155491
TU177850 lncRNA upstream 416359 51387977 ~ 51400214 (+) True G155489
TU177876 lncRNA upstream 461107 51350626 ~ 51355466 (+) True G155515
TU178428 lncRNA downstream 45226 51865472 ~ 51889131 (+) True G156027
TU178441 lncRNA downstream 63239 51883485 ~ 51896834 (+) True G156038
TU178453 lncRNA downstream 85925 51906171 ~ 51906450 (+) True G156050
TU178463 lncRNA downstream 99134 51919380 ~ 51919580 (+) True G156060
TU178465 lncRNA downstream 101125 51921371 ~ 51921572 (+) True G156062
LOC118944140 mRNA upstream 387001 51429454 ~ 51429572 (+) True LOC118944140
XR_005039449.1 mRNA upstream 394120 51422337 ~ 51422453 (+) True LOC118944142
LOC118944199 mRNA upstream 394544 51421856 ~ 51422029 (+) True LOC118944199
XM_021617652.2 mRNA upstream 399419 51413140 ~ 51417154 (+) False rl28
XM_021617626.2 mRNA upstream 399472 51412687 ~ 51417101 (+) False rl28
XM_021564725.2 mRNA downstream 1082945 52903191 ~ 53018812 (+) True cspg4
XM_021564755.2 mRNA downstream 1313251 53133497 ~ 53167781 (+) False snupn
XM_021564748.2 mRNA downstream 1313467 53133713 ~ 53167781 (+) True snupn
XM_021564770.2 mRNA downstream 1384835 53205081 ~ 53249227 (+) False ptpn9a
XM_021564780.2 mRNA downstream 1385640 53205886 ~ 53249227 (+) True ptpn9a
TU177903 other upstream 395451 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 399455 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 494140 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 649399 51165415 ~ 51167174 (+) True G154859
TU176287 other upstream 1716099 50098416 ~ 50100474 (+) True LOC110491026
TU181296 other downstream 2201362 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 2532737 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 2908050 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 4125897 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 4424798 56245044 ~ 56252598 (+) True G161687

Expression Profile