RNA id: TU180516



Basic Information


Item Value
RNA id TU180516
length 269
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G158057
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53170972 ~ 53171240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTTCAAATAGGCCTAGCTTGTGCATCACTATCACTAGATCTCACTAGCTAACATGGGCGGTAGCTAACTTAATTATTCTTACATGTACTACCAAAGTTCAAGTTGAATTGGCGTGAAGATGGGCAAAGAGTTTCCTTGCGCCATATTGTTGGACCAGTTTCGGCACTATTCCTTTTAATTCCAAATCACATTGAATTTTACTTTATCATTTAAACCAAACCTATGACCTGACCCATCACCTTATGTATTACTGCCCCCATTTACAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180505 lncRNA downstream 5736 53159338 ~ 53165236 (-) True G158048
TU180433 lncRNA downstream 54477 53116259 ~ 53116495 (-) True G157979
TU180348 lncRNA downstream 172305 52997999 ~ 52998667 (-) True G157898
TU180361 lncRNA downstream 174746 52995944 ~ 52996226 (-) True G157911
TU180265 lncRNA downstream 267134 52853690 ~ 52903838 (-) True G157816
TU180723 lncRNA upstream 4166 53175406 ~ 53264124 (-) True G158241
TU180797 lncRNA upstream 74493 53245733 ~ 53246513 (-) True G158306
TU180801 lncRNA upstream 81617 53252857 ~ 53269371 (-) True G158308
TU180892 lncRNA upstream 225422 53396662 ~ 53396931 (-) True G158393
TU180782 lncRNA upstream 267675 53438915 ~ 53439271 (-) True G158291
XM_021564736.2 mRNA downstream 58425 53073293 ~ 53112547 (-) False snx33
XR_005034526.1 mRNA downstream 390513 52779596 ~ 52780459 (-) True LOC118937283
XM_021564711.2 mRNA downstream 1081425 51822291 ~ 52089547 (-) True lingo1a
XM_021564707.2 mRNA downstream 1294963 51822291 ~ 51876009 (-) False lingo1a
XM_021564629.2 mRNA downstream 1941643 51180770 ~ 51229329 (-) True LOC110491276
XR_005037026.1 mRNA upstream 11358 53182598 ~ 53185801 (-) False LOC118940482
XR_005037027.1 mRNA upstream 11358 53182598 ~ 53188868 (-) True LOC118940482
XM_021564834.2 mRNA upstream 140781 53312021 ~ 53343562 (-) True crabp1a
XM_021564848.2 mRNA upstream 201992 53373232 ~ 53396107 (-) False slc25a44a
XM_036950373.1 mRNA upstream 201992 53373232 ~ 53396108 (-) True slc25a44a
TU180370 other downstream 58681 53032902 ~ 53112291 (-) True snx33
TU177982 other downstream 1753862 51412269 ~ 51417110 (-) False G155610
TU177680 other downstream 2121092 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other downstream 2121092 51039870 ~ 51049880 (-) True LOC110491241
TU177629 other downstream 2199037 50971076 ~ 50971935 (-) True G155281
TU181650 other upstream 685446 53856686 ~ 53857552 (-) True G159120
TU181691 other upstream 798203 53969443 ~ 53971339 (-) False cd59
TU181692 other upstream 798203 53969443 ~ 53971339 (-) True cd59
TU181798 other upstream 1086186 54257426 ~ 54268353 (-) True ambra1b
TU182463 other upstream 1557059 54728299 ~ 54728860 (-) True G159890

Expression Profile