RNA id: TCONS_00028368



Basic Information


Item Value
RNA id TCONS_00028368
length 1431
RNA type mRNA
GC content 0.50
exon number 10
gene id XLOC_014276
representative True

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43004408 ~ 43016395 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AATCACATCGCTTCTTGTTACCGGACGTGTTTCACTCGACGAGCGTGTGTAGCTCAAAGGTGGAGGGTAGCTCGAAAAACTCATTCATTGAAAATAAGCGGATATTTTGACATACTGTTCATTTACTGTAGAAATCTGAGGCATTTACATAGCAATGATCGAACCAAAGAAGCGTGTGGCGGATATGGCCGTTGTTCCCGTAGGAGTGAAGAGGCCGCGGACGGAGCTGGTGGCCGCAGCACAATCCCAGCAGCTCTCCGCTATGggccCGCCACGCAGCTCCAGTCTGCAGGCTCCTATAATGCTGCTCTCTGGTCATGAAGGAGAAGTTTACTGCTGCAAATTTCACCCTAATGGAGCCACTTTAGCCTCTTCAGGATACGACCGCCTCATCTTGATGTGGAATGTTTATGGAGACTGTGAAAACTACGCCACGCTTAAAGGCCACAGTGGAGCCGTGATGGAGCTTCATTATAACACAGacggcagcCTGCTGTTCTCTGCCAGTACGGAtaagacagtgtgtgtgtgggacAGCGAGACGGGGGAGCGTGTGAAGCGGCTGAAAGGCCACACGTCCTTCGTGAACTCGTGTTTTCCAGCACGTCGCGGCCCACAGCTGGCCTGCACCGGCAGCGATGACGGAACTGTGAAGctGTGGGACATCAGAAAGAAAGCCTCCGTTCACACTTTCCAGAACACATATCAGGTTCTTAGTGTGACGTTCAATGACACCAGTGACCAGATCATCTCAGGAGGAATCGACAATGACATAAAGGTGTGGGACCTCAGACAGAACAAGCTGATTTACAGTATGCAGGGTCACGGGGACTCTGTGACTGGACTAAGTCTCAGCGCGGACGGATCTTACCTGCTCTCCAACTCCATGGATAACAGCGTTCGTGTCTGGGATATTCGTCCATTTGCACCAAAAGAAAGGTGTGTGAAGATCTTTCAGGGAAATGTCCATAACTTTGAGAAGAATCTTCTGAGATGCTCCTGGTCTGCTGATGGCAGTAAGATTGCAGCTGGCTCTGCTGACAGgtttGTGTATATTTGGGACACAACGACCCGCAGGATCGTCTATAAGCTCCCTGGTCACGCTGGCTCTGTCAATGAGGTGGCTTTCCATCCAGAGGAGCCCATTGttctgtctggatccaGTGATAAACGCCTCTACATCGGAGAGAttcaataagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcgcgtgtgcgtgtgcgtgtgtgtgtgcgtgtgagaggaTTAGGAGGAGATATGATTTGGAATTTGGCTGTATCTGTATTTGTCTGCAGAATATTGCTGGCCAGTTGTGGGAAATTGTTGAACGTTGcctttttttatgcttttaataAACTTGTTTCCAGAA

Function


GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-978 Predicted to be located in viral nucleocapsid. Orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40).

Ensembl:

ensembl_id ENSDART00000038230

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00028359 lncRNA upstream 206002 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028357 lncRNA upstream 230829 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028356 lncRNA upstream 239642 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00028347 lncRNA upstream 401119 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00028372 lncRNA downstream 8292 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00028377 lncRNA downstream 56298 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00030037 lncRNA downstream 56298 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA downstream 58248 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00030038 lncRNA downstream 234158 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028367 mRNA upstream 11102 42983613 ~ 42993306 (+) True XLOC_014275
TCONS_00028366 mRNA upstream 11174 42955280 ~ 42993234 (+) False XLOC_014275
TCONS_00028363 mRNA upstream 87182 42886413 ~ 42917226 (+) False XLOC_014273
TCONS_00028364 mRNA upstream 87635 42898239 ~ 42916773 (+) True XLOC_014273
TCONS_00028362 mRNA upstream 129223 42847306 ~ 42875185 (+) True XLOC_014272
TCONS_00028369 mRNA downstream 1233 43017628 ~ 43035187 (+) False XLOC_014277
TCONS_00028370 mRNA downstream 1377 43017772 ~ 43031383 (+) False XLOC_014277
TCONS_00028371 mRNA downstream 1536 43017931 ~ 43026832 (+) False XLOC_014277
TCONS_00028373 mRNA downstream 21262 43037657 ~ 43089455 (+) False XLOC_014278
TCONS_00028374 mRNA downstream 21262 43037657 ~ 43090728 (+) False XLOC_014278
TCONS_00028365 other upstream 88867 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 269123 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 666977 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 815304 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 2045792 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028379 other downstream 61349 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 64530 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 423006 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 648996 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 993078 44009473 ~ 44032164 (+) False XLOC_014312

Expression Profile


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