RNA id: TU181088


Basic Information

Item Value
RNA id TU181088
length 2592
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G158583
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53682932 ~ 53685702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaggagtaggcaagagaatggtcatggacaggcaaaaggtcaaaaccagatcagagtccacgaggtacagagtggcaggcaggcttgaggtcaaggcaggcagaatggtcaggcaggcgggtacagagtccagaaacaggcaaaggtcaaaactgggaggactagaaaaaggagaaataGCAAAGGCAGGAGTacaggaaaaccgctggttgacttggacataaaagacaaactggcacagagagacaggaaacacagggattaaTACACTGGGGAcgacaagcgacacctggagggggtggagacaataatgaggacaggAGAGCTGATTGGTGTCGACTGGCTGCTCAGGTAGACAGGAAAGGCCATACAGGACAATGACTCTGACTCGGAGGAGACTGATTTTGAAGGCTATGCATTGGAACCCACAGTTGGTAGTCCTCTGGATGACTTCATCACCACCACAGCTGACTTCTCTGCTGCCAGCCCCACCCAGACTGCTCCCAATGCCACCAGTACCGGGCCTGCTTCACGCACATCCCAGTCTGCCGCCAGCCAACTTGATTGgtttgatacagttgaagtcggaagttttcatacacttaggttggggcattataacttgtttttcaatcactccacaaatttcttgttaacaaactatagatttggcaagtcggtgaggacatctactttgtgcataacacaagtcatttttacaacaattgtttacagacagattatttcacttacagtataattcactctatcacaattccagtgggtcagaagtttacatactgtaagttgactgtgcctttaaacagcttgaaaaattccagaaaatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctcccttctaactcagtgcctctttgcttgacattatggttaaatcaaaagaaatcagccaaggcctcagaaaaataattgtaaacctccacaagtctggttcatagaactgtttggccatgatgaccatcgttatgtttggaggcaaaaggggatgcttgcaagctgaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgtacttcacaaaatagatggcatcatgagggaggaaaattgtgtggatatattgaagcaacatcaagacatcagtcaggaagttaaaacgtggtcacaaatgggtcttccaaatggacaatgaccccaagcatacttccaaatatagtggtgatcctaactgacctaagacaggaactatttactacgattaaatgtcaggaattgtgaaacactgagtttatatgtttttattttaatacattctaggctgcatgatgcgaatctaacgatgatttgaaaaaagttgcataaaaggcatgagctctgctttgttatttgtgcaggctgtacacacttaatcagtctctcattcacaatttgacaagcacttgataatgtctTGAATTTCCCGgcagcatcccctttgtgtggccgtaatgccccctaaaaaaagCCATGCCTTTTACCGCCagtggccattgtgcccttgggctaaatataataattataattcccttctccctgcGTGCTACTTGCtgtgaagcacctctcactcacatggctctctgtcACATGtccgggtctttctcacaggctgaAAGTGAAGACAGACACGTCCGGGATGCAACtgctgtcgtggaaatttcctctatcaccaaatcatgggagcaaaccacaacacaagtcagagttagttatcaaagtccatctttaattatatcagctctatcacaatcctgtgactctcaggcaattcagtgtctaaccatgaattctctgagagccccctccacatttcaaatgaggtcctttatagcaaagacacacacaggataagacagcatcggcataattcattgttcagctttgtctccttactcaaactcagaaccataaaccaaccctccatatcaacaggcatatataaaattgtcatttagatacaaccaactctaaatacaaccaatcctatcttgacaagatcacagagacacactgactggcacacagacattgtggagccaagagatatgtttacacatgatgatactttgacctctcccctctctgcggtccatgcaacttagtcttgacatagaacagatactgcaaaccctgccacagtattatacaaaaataacattcttgatgagaagtaatttacacacatttgatgaacatcttacatatgttaccaacaaattctgattcTTCCACGACATTCCCCTCTCAAGGGACTCAGTCCCTTCTGAAGAATCAGAATAGTGACATACTCAATATTTTAAAATTCAAATCCCCTCAATGTCTAATACCTTAGCTTATATGTAAGCTTTCTCCCTTCTGAAACTAAGTTTACAACCTTTATTCTACAAGACAAACTTGCACATgtttaataacacagaataatccatttgaggaaaataaaaacataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181089 lncRNA upstream 73 53682642 ~ 53682859 (+) True G158584
TU181115 lncRNA upstream 5666 53676969 ~ 53677266 (+) True G158607
TU181013 lncRNA upstream 128309 53554358 ~ 53554623 (+) True G158514
TU180995 lncRNA upstream 136837 53545871 ~ 53546095 (+) True G158496
TU180994 lncRNA upstream 137159 53545571 ~ 53545773 (+) True G158495
TU181120 lncRNA downstream 74 53685776 ~ 53685981 (+) True G158612
TU181121 lncRNA downstream 336 53686038 ~ 53686811 (+) True G158613
TU181124 lncRNA downstream 2978 53688680 ~ 53688980 (+) True G158616
TU181125 lncRNA downstream 3472 53689174 ~ 53689596 (+) True G158617
TU181126 lncRNA downstream 4500 53690202 ~ 53690403 (+) True G158618
XM_021564940.2 mRNA upstream 31078 53637305 ~ 53651854 (+) False rbpms2a
XM_036950411.1 mRNA upstream 31078 53637305 ~ 53651854 (+) False rbpms2a
XR_005037045.1 mRNA upstream 31078 53637305 ~ 53651854 (+) False rbpms2a
XR_005037046.1 mRNA upstream 31078 53637305 ~ 53651854 (+) True rbpms2a
XM_021564909.2 mRNA upstream 216616 53450258 ~ 53466316 (+) False psma4
XM_021565010.2 mRNA downstream 14116 53699818 ~ 53794946 (+) False LOC110491473
XM_021565019.2 mRNA downstream 14116 53699818 ~ 53794946 (+) False LOC110491473
XM_021565027.2 mRNA downstream 14117 53699819 ~ 53794946 (+) False LOC110491473
XM_021565036.2 mRNA downstream 14121 53699823 ~ 53797088 (+) False LOC110491473
XM_021565043.2 mRNA downstream 14121 53699823 ~ 53797088 (+) False LOC110491473
TU178397 other upstream 1858750 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2261810 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2265814 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2360499 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2515758 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 335906 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 667281 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 1042594 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2260441 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2559342 56245044 ~ 56252598 (+) True G161687

Expression Profile