RNA id: TU181218


Basic Information

Item Value
RNA id TU181218
length 322
lncRNA type intronic
GC content 0.39
exon number 1
gene id G158707
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53825402 ~ 53825723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgctccctgctgtttcattacattacTTTGAAATGCCATAAATCATTTAATAGCTACTGCAAGCTCTTTAGTTTATATTCTGGGATAATTTTCAACATGGTACAGCTCCTGTAACGACACAGTTAAATGTAACTTTGTAACTAGTGCAATGTGTGTTTTGGGAAACTGGTGTGACATCTTCGGACATTATTTTTACGATGCATTGTTGAAACACTCGTAAACCTAAAGTACTGACGAATTTTGTCCAACATGACGCCACACCAGGGGTACGTTCAATTCGCTTAAATGTTTGCTAGGTTGCGGAACACCTTGTACTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181217 lncRNA upstream 626 53824537 ~ 53824776 (+) True G158706
TU181126 lncRNA upstream 134999 53690202 ~ 53690403 (+) True G158618
TU181125 lncRNA upstream 135806 53689174 ~ 53689596 (+) True G158617
TU181124 lncRNA upstream 136422 53688680 ~ 53688980 (+) True G158616
TU181121 lncRNA upstream 138591 53686038 ~ 53686811 (+) True G158613
TU181244 lncRNA downstream 62821 53888544 ~ 53888842 (+) True G158731
TU181245 lncRNA downstream 63181 53888904 ~ 53889239 (+) True G158732
TU181260 lncRNA downstream 89251 53914974 ~ 54010809 (+) True G158742
TU181207 lncRNA downstream 143731 53969454 ~ 53970875 (+) True G158696
TU181294 lncRNA downstream 190032 54015755 ~ 54016247 (+) True G158776
XM_021565070.2 mRNA upstream 1768 53797226 ~ 53823634 (+) False cpeb1a
XM_036950502.1 mRNA downstream 27105 53852828 ~ 53867057 (+) False snx1a
XM_036950517.1 mRNA downstream 27105 53852828 ~ 53867057 (+) False snx1a
XM_036950519.1 mRNA downstream 27105 53852828 ~ 53867057 (+) False snx1a
XM_036950499.1 mRNA downstream 27105 53852828 ~ 53868273 (+) False snx1a
XM_036950509.1 mRNA downstream 30520 53856243 ~ 53868273 (+) True snx1a
TU178397 other upstream 2001220 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2404280 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2408284 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2502969 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2658228 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 195885 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 527260 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 902573 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2120420 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2419321 56245044 ~ 56252598 (+) True G161687

Expression Profile