RNA id: TCONS_00028369


Basic Information

Item Value
RNA id TCONS_00028369
length 6022
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_014277
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43017628 ~ 43035187 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACCAAATTAAAGCCACGcctttattatttgtttacaatatataatatttatagttTTCACAATTATAACATAATATCCATCCATGAAATCGTCGGTTTCCACTTTATAATTTCCTCCACAGTCGCATGATGGTCTCTTtgtgctgtgtatgtgtgtgtgtgtgtgagtgaacgCCTCGTGTTGTGGCGCGGGCGCGAGCGTCTCTATGCGGGTGCGCGCGCGGGCTGCAGACTCGCACGCGGGTGTCTGATTTCCACCCACAAACCCGCTCCGTGCACCCTCCCGGGGCCGATGTTGACAAAGAGAAGGATGGTGGCTCAAGCTACACCGCCGGTTTAGTAATTCAGCTCATAAAAACCAACACCGGAGCTCACGGTAAGTCACAAAGGCTCCCTTTGTGTTGGTTTCATTGGCGTTATTTTCTTACCTCGCGCTCTTATATACACCCCCCGCTCCGTCTGATGCTTATCATATGATGCTCATTTCTGCCTGTTAATCGCGCCCGTTGACTCTTCCTCTGTTCTTTGTGCTATTTTTGGGGTCTGGTACCCGGTACGGAATGAAGGTGTGGCAGATTGGCTAGGATTTGAGACCGCAGTTTGGACGCTTTGATTCGGACAATTCGGCGGAGGAGCTCCGGAATGACCAGCGGACATCCGCGAGCATCGACGCCGCGAAGCGTGCACTCGGCCCGGCGGGCGTCTTGATGTTTTGACTGCTGATCGTGAAGCGCGCTGGAGCTCACCGGGGACTCCGCTTTCTCCCGACGCCTCGCGGGGCCCAAGCCGTGCCTCAAGCGCGAGAGCATGGGTCGGTGCGACGGGAGGTGCACGCTGGTGGTCATCTGCTGCCTGCAGCTGGTCGCTGCATTACAGAGGCAGGTGTTTGACTTTATGGGATATCAGTGGGCTCCCATCCTGGCCAACTTCCTCCATATCATGGCCGTCATTCTGGGAGTGTTTGGAACTGTGCAAGTCCGCTCCAGATATCTGATACTGTATGCTGTGTGGCTTGTGGTCTGGGTGGGCTGGAACTCGTTCATCATCTGTTTTTATCTGGAAGTTGGTCACCTGTCTCAGGACAGGGATTTCCTGATGACATTTAACACTTCGCTTCATCGCTCCTGGTGGATGGAGAACGGGCCTGGTTGCCTAGTTACTCCAGTGCCTGATTCGCCATTGGCTCCTCAGGATCATCATGTGATCACTGTCAGCGGCTGCTTGCTGGACTACCAGTACATAGAGGTGGTCAGTTCAGCTCTGCAAGTGTTTCTCGCACTCTTTGGATTTGTTTATGCCTgctatgttagtaaatacagcCCGGATGACGAGGACAGCTTTGATTTCTTTGATGGATTGGGCTCGTATAATTACCAGCCTCCACAGAAGATCTCCCAATTACAGCTCCGGCCTCTCTATACGACTGGATAGAAACCGGAAGAAATTCCAGGTCCAGAAGAAAACACCTGCTAATTTCAGAGAGAGAGGAAGTCCTCTTCATTACGGGAAACACTCAACCAGCTTCAGTGTCTGTTTCCCGCAAACTTTTGTCTCCCTCTGttggagaaaacacacacacgcaccagcCAGAGTTACAGAGAGACGACCAGCAACCAGACCGACACTACTTAACAGACTTCAAGACAgtcaaaactgtgtgtgtgtgtgtgtgtgtgttcgttcaCGTGCGCACAAGCACATAGGCCTTTGTATTTGTTTGAGTATTGACACGCTGTGCGACCTTTGACCCAGGTAATCTTTGAACACAAATGCCGGAGTTTCTGGCAGGAGAGCGGCTGTTTATACTCCGATATAAGACACTATAATGTACCGTGGTAGATGAATGTGTTAGGTTGGCTTAGATGTGTATTTCGGGGGGAATGCTGTAGGACTATTTGTGCATGTAAATCTCACAATAGAGGAGTTGTGCCTCTGGGTTGGCCCTCATACGTCTGCGTGAATGCATGAATGTGCGTCGTGTCCGTGTATTTATGCACATAACGGGACTAGCCATATATGTTGATTGATTTGGACAGGAGATTAGAGTGAATGTATGGTAATGTACACTTCTTGTTTTGAGTGGCTGGAGGCGGCGTAAGGGCAAACCCGAAGGGTGGGACGGCATAATAAACTCTTTCTAGATTAATCTAATGTTTTGTTCACTTGTACATGAGATTGGTGGTCACATTTTATTCACACTAAAAAAACAAtgtcttttgctgcttgtttggtCTACTTATTGAAAAGgggttgaaacaacacaattcttaaaggagcagtatgtaagtttgacacccagtggttgaactaggtattgcatgcgGGTTCAAAacacgcaggttgccagattgacggcACCAACAGGAGTGTGTCTGACTATTAAGCCTGATTTAAGTcaagttctaaataaaagcaacggcatgcGATAGATAGccgaatattttccatattaaaagaagtttttgtcTTAACCGACACCTgatttttctattttagaaacggctgAACAACATAAAACTGAcagtgatcacctcaggtacagctcatgtgctttattcagcgttaaatgctaataatgtgagtttgaaagCCATTTTACATGAAATTTttccatactactgaaagcagcagcagagtgttcacctcagatcttgagaataaaataaaccatttgaaattaaacttcagaaccagtggcgtagcgcaaaatgcggaggcccccctgcagggatcactgacagGGCCCCCAGTTGAGGGGGGGACTACGCGgggaagcgatcacaaactgaggagtgggaaagggggcggggtggagcgacaacgcggggaatccttcgcAAACAGGATTGggaaagggggcggggtggagcgacaacgcggggaatccttcgcAAACTGAGGATTGggaaagggggcggggtggagcgacaatgcAGGGAATCCTTCGCAAACTGAGGAGTGggaaagggggcggggtggagcgacaatgcggggaatccttcacaaactgaggagtgggaaagggggcggggtggagcgacaacgcggggaatccttcgcAAACTGAGGAGTGggaaagggggcggggtggagcgacaatgcggggaatccttcacaaactgaggagtgggaaagggggcggggtggagcgacaatgcAGGGAATCCTTCGCAAACTGAGGAGTGggaaagggggcggggtggagcgacaatgcggggaatccttcacaaactgaggagtgggaaagggggcggggtggagcgacaacgcggggaatccttcgcAAACTGAGGAGTGggaaagggggcggggtggagtgaCAACACAGGGAATCCtgcacaaactgaggagcgatcacaaactgaaaGCGGCGGGGACCCCTAATCACACACgtgggcccgtccgctacgccacttttcagaactgtgactcagtgcaaacaacccaaatcagtgattcagcatctacatataataacattaaagagggttaatatgtattaattagattataaacattACCATTTCGTGACTGAGTGCGTGTTTTGTGCTTCTAattgctgtatttaaatttctgtcgtgtttcatctggtgcaaacagccaaattgcttatgactgcaaatctcgtcacattgtgggttgttaggacacggggttacaatgtaccctgctcacctaatgtttacattaagTTATAAGAGCAGTTAGATTatatgctaattaataacctcatgtggagctctgagggccctgtcatacacccagCACAAGGCGATACGCAAATGTTGtctgctagtttcagctcggcgcaagaatcgttttgacgttttgcgccacgctgtttaaatagcaaatgcatttgcgctcatatgtgcacctataggcgttctggtttgcaaaaggaggcgtgttgaggcgcgttgctattttgaggaacttattTAGTCTattccaggggtggccaaccctgttcctggagatctaccttcctgcagatttcagttgcaacccatatcaaacacacctgcctgtaattatcacgtggtgttcaggtcctaattaattggttcaggtgtgtttgatatcgGTTGCAACTAATATATGCAGGAAGTGGCTCTCCAGGAttagggttggccacccctgctttaaaccaaAGGTCTGCAGACTTGGTCGTGGACGGtgttctggagagtttagctccaaccctaatcaaacagccCTGAACCGCTTAATCAGGCTCTTACtacatatactagaaacttcctggcaggtgtgttgaagcaagttggagcaaaactcagcaggacaccagccctccaggaccatgtttggccacccctgcattAAACTCTCTCAggtcttaaaggcacagttcacccaaaaatgaacactctgttatcatttactcaccctttacttgttccaatactgtttgactttctttcttctgttgaacacaaaagaagatattttgaagaatgtttgaagaaagctgaaaccattaacttccataatattttttatgGATGTCaattgggcggcatggtggctcggtggttagcactgtcgcctcaaagcaagaaggtcgctggattgaCTTCcatctgggccagttggtatttctgtttggagtttgcatgttctccccgtgttggcgtgggtttcccttctggtgctccagtttcccccacagtccaaacacatgcgctattagtgaattgaattaacttaattggtcgtagtgtacgagtgtgtgtatgaacatgagagtgtatgggtgtttcccagtaatggtttgcagctggaaggtcatcccctgcataaaaaatatgtgctggaatacttggcggttcattctgctgtggcacggcacccctaataaataagagactaagccgaaggaaaataaatgaatggaagtcaatggttactggtttccagcattcttcaaagtatcttcttttgtgttcaataaaagaaacTCAAGTCTATAACACTCGAGGCAGTAAATaatgagtgcattttcatttcttagtgaactatctctttaaaagcaTGCAAGTGATCAACTTTATTATCGAtgatgaaatgatatattgtgcaggtcTAATTTAGATGGATAGATGTGAGGATGAAAAGAGCTCTGGTTTTCTCAGGGTGAGGTGTGTATTTGCGAGCGCACCCCAGAGAGAGAGCTGTGAATCAGATCTGAAGACAATGAACGGAGCTGAATGTACGTCATTCGCTCGCAGCCAATGCTCTTCTGCTCCTCATACAAAGGCTGTTCAAAAGCAGCTCACATTTCAGACGGCCTGTTATTTAAGAATGACCACGGTTTATTATGAAGAGCATCCAGCTTTTAGACTTCCTCATGATTGCTTGTGCATTGCAAATAACGCTTCTCTGAGTTTTTGtctccaaatatctgaaaatccTTAAACTGAGAAGCACTTTGCAGACAAGTAAAACATGCtgagttttgttttcagaaacgaTGTCAAAACTGAGTTTTTCCTTGCATAAATGTAATTATCTGCATGTGGAGTGAGCTAAACTTAATTTCGGTTTGAGTTCAGATCATTTTgcttatgttcattcattcattcattttcttgtcgtcttagtccttttattaatccggggtcgccacagcggaataaaccaccaacttatccagcaagtttttacgcagcggatgcccttccagctgcaacccatctctgggaaacatccacacacacactcatacactacggacaatttagcttacccaattcacctgtactgcatgtctttggactgtgggggaaaccggagcacctggaggaaacccacgcgaaggcagggaggacatgcaaactccacacagaaacgccaactgagccgaggttcgaaccagcaaccttcttgctgtgaggcgacagcactacctactgcgccactgcctctcaCCCCTAGTGGCAGTTAATATTACTAATTTTAAGGCATACCTCACTTAATTTTTACTTGTTtctacaaaca

Function

GO:

id name namespace
GO:0002028 regulation of sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1472 Predicted to be involved in regulation of sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human NKAIN1 (sodium/potassium transporting ATPase interacting 1).

Ensembl:

ensembl_id ENSDART00000182608

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028359 lncRNA upstream 219222 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028357 lncRNA upstream 244049 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028356 lncRNA upstream 252862 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00028347 lncRNA upstream 414339 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00028377 lncRNA downstream 37506 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00030037 lncRNA downstream 37506 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA downstream 39456 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00030038 lncRNA downstream 215366 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028400 lncRNA downstream 385578 43420765 ~ 43424145 (+) True XLOC_014287
TCONS_00028368 mRNA upstream 1233 43004408 ~ 43016395 (+) True XLOC_014276
TCONS_00028367 mRNA upstream 24322 42983613 ~ 42993306 (+) True XLOC_014275
TCONS_00028366 mRNA upstream 24394 42955280 ~ 42993234 (+) False XLOC_014275
TCONS_00028363 mRNA upstream 100402 42886413 ~ 42917226 (+) False XLOC_014273
TCONS_00028364 mRNA upstream 100855 42898239 ~ 42916773 (+) True XLOC_014273
TCONS_00028373 mRNA downstream 2470 43037657 ~ 43089455 (+) False XLOC_014278
TCONS_00028374 mRNA downstream 2470 43037657 ~ 43090728 (+) False XLOC_014278
TCONS_00028375 mRNA downstream 2471 43037658 ~ 43084065 (+) False XLOC_014278
TCONS_00028376 mRNA downstream 2478 43037665 ~ 43065877 (+) False XLOC_014278
TCONS_00028381 mRNA downstream 83827 43119014 ~ 43122329 (+) False XLOC_014281
TCONS_00028365 other upstream 102087 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 282343 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 680197 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 828524 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 2059012 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028379 other downstream 42557 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 45738 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 404214 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 630204 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 974286 44009473 ~ 44032164 (+) False XLOC_014312

Expression Profile

//