RNA id: TU181294


Basic Information

Item Value
RNA id TU181294
length 493
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G158776
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54015755 ~ 54016247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGGAGTGTTTAGGTAGGTCACtgcactcttcttcctctgcacGGCGTCGAAAGGAATACATATGTGGGAGAACAAATCCAGCTTTGATTTGACTGCAAAGTCCATGTTGCTCACTCAAAAAGGACACCCGTTTTCTTTTCATATGCTACACAGGGCTAGATTCTAACTCGGAGTCCATGCATTCAGATATTCACATGAATTCAGATATCCACATGCAAGGAAAACGGTGCGTATTATGGTCGCATTTTAAAAAGTATGTGCACTGGCATTCAACCTAATAAGAAACACATTTTGTACAGGGTCGGGTAGTAATGGATTACATGTAATAGAGATTACGTTATCCGATTACAGATATGAAGTATGGAGTTTCTGTATCCCAATTTGCCTATGCTAAAAATACAGATATTTCTGCACATGTGCAGGATATTGTTTTTTACGTAGCCAAGTGCCTACTCCGTTGCCTACGTAGCTGCTGTGCCGAGTGCTCCgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181260 lncRNA upstream 4946 53914974 ~ 54010809 (+) True G158742
TU181207 lncRNA upstream 44880 53969454 ~ 53970875 (+) True G158696
TU181245 lncRNA upstream 126516 53888904 ~ 53889239 (+) True G158732
TU181244 lncRNA upstream 126913 53888544 ~ 53888842 (+) True G158731
TU181218 lncRNA upstream 190032 53825402 ~ 53825723 (+) True G158707
TU181299 lncRNA downstream 11411 54027658 ~ 54028060 (+) True G158781
TU181301 lncRNA downstream 13377 54029624 ~ 54029860 (+) True G158783
TU181303 lncRNA downstream 15568 54031815 ~ 54032061 (+) True G158785
TU181336 lncRNA downstream 58717 54074964 ~ 54075183 (+) True G158818
TU181347 lncRNA downstream 70228 54086475 ~ 54086791 (+) True G158829
XM_036950596.1 mRNA upstream 46592 53959161 ~ 53969163 (+) False kcnj11l
XM_021565260.2 mRNA upstream 46698 53959138 ~ 53969057 (+) False kcnj11l
XM_036950603.1 mRNA upstream 47219 53950725 ~ 53968536 (+) False kcnj11l
XM_021565393.2 mRNA downstream 84520 54100767 ~ 54191587 (+) False dgkzb
XM_036950707.1 mRNA downstream 95721 54111968 ~ 54191587 (+) False dgkzb
XM_021565401.2 mRNA downstream 98726 54114973 ~ 54191587 (+) False dgkzb
XM_021565383.2 mRNA downstream 101060 54117307 ~ 54191587 (+) False dgkzb
XM_036950710.1 mRNA downstream 116586 54132833 ~ 54191587 (+) False dgkzb
TU178397 other upstream 2191573 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2594633 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2598637 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2693322 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2848581 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 5361 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 336736 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 712049 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 1929896 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2228797 56245044 ~ 56252598 (+) True G161687

Expression Profile