RNA id: TU181410


Basic Information

Item Value
RNA id TU181410
length 2766
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G158887
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54213612 ~ 54216497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCTCTTTAATTACATCACAGAAAAGTCAAAGCCAATGAAGTGAACAAACTTGATAGTTTGATATAGTTGTTTTTGTAATATTAGGCGAGACAGTTTACCTTTGTATACCATTGATTTGCACTGTTAAATGTGTAGTTGTGGACCTACAGCATGTGTATCATTCAGGGTGGGAGAAGTGGGAGAAGTGATGCGGTACAGCGCTCTTTCACACAAAACAGACACATGAACAGCCAACTTTTGTTTCTTCTTTTTAAATCTTCTCTAATCAAGTAAAGCCAGGAGGAGCATTCAAATAGCTCTTCATTCGCTCCTTTCATTAGGTCCTGTACTCTCAATATGGCATTTTCAGCTAATGTTCATtaaccccttctcccctccccccaaGAAATCCAAATCCCACCAACTTAAACTATCAATATAAGAACCCTACAAAGCGATACAAAATGTGAATAGCTAAGCATTATGGgtcattttaaaaataaaagttaaatggGCCATTCTTTCTCTCGCCTTTAAGCACCCGACACGGTCATGGGGCTTTAGTGAAATGATATGCTGAGGACACTGCCTGTCACAATAGGCCAGATGTACCTCTGACGACATTACAGTACAAAACCATTAAAAATGAATGGTGATCAAGAATTCaagttcaaaataaaaaaaatgactgGTTCAGCAGGGGGACAGGTTGAGATTACAATCGAAAGCTCTCGACCCTGACGTACCAAACCACACCATTAGGGCAGAGTAACTAAGAGAGATtctacatacatacagacacacacagaatagCTCTTCTTCAATGCTTCTGAAGCGCTGGGTGTGTTGGTGCTGGGGTTTGACTGAAGACGCTCAGTGAAGACACTCCTCATTGACAGACAGCTATGGATAAGCCAATCCAGCTAgccccctgctctctccccctcagcGTCTTTGTGGGAAGGGGAGGGTCACTGTGCGTAATTCAAGTCAACAGTCAGGTTTGTTTTACTGAATCCTAAATGGTAACTACTCGTCTCTCACGGGGTCCCTGGAGCAACAGTGGCAAGTGCAGGCGACAGGGGGCtctaggtctggtctggttccgGGGGAAGGTCTCCATCACACTTTTAGGCCGGAGGGGTGGGGGTTTGTGGAGTGTGTGACCAGGGACCAGATAGTAAACAAGTCCTGACCCGAACCTCACCGCTCACCATACACACCTCGACACCAAACACAGTCACTCTAGTGCAACAGGAGAGGAATGACGGTGCTGAATGACGGTGCTGCTTTTCAGCATGACAAGCCAGGATGGCTGGCTAATGCTTCCCCAAACAGATGTGGGAGTTTGAGTTTGTTAGTCCTTCAATGCTGATTTGTCTGTATTTTGCTAGACTTTTGTACTGATGGCGTTCCCTTTTTTTGTCAGGAAACAATGCAGCATTATTGAAAACATGCAGTAGAATAGTACAGTATCAATAGTCAGAAATGATCGATTAGACATTAACATTACATCCACCATTTTGTATACATCCACCATATCCTGCTTGAACTTGAAGCAATAGGGGACTCTTAACTTTGAATCAGATGCTCTGTACACTTGGGGCCTGATGGGTAATATGGACAACAATTATTTTGAGGGGACCTCTCTGACGTAGtcaatctacactgaacaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcatgaggtgaactaaatcccagaaatgttccatatgcacaaatatcatattgctctcaaatgttgtacacaaatgtgtttatatccaTGTAAGtgaccatttctcctttgtcaagataatctatccacctgacagatgtggcatatcaagaagctgattaaacagcatgatcattacacaggtgcaccttgagctggggacaatgaaagtccactaaaatgtgcacttgtcacacaacacaatgccacagatgtctcaagttgagggagtgtgcaattggcacgcTGACTAAAGGAATGTCAACCaaaactgttgccagagaatccaatgttaatttctctaccataagctgtcgccaatgtcgttttagagaatttcgcagtacgtccaaccggcctcacaaccacgcCAGCTCAGGATCTTCACATTCAGCTTTTCCCCTGTGGGATCGTCTCAGGGGGTGGGGTACTGAGGAGTCTCTctttgtaataaagccctttggtggggaaaaactcattctgattggctgggcctagctgccaagtgggtgggcctatgccctcccaggcccactcatggctgcgcccctgcacagtcatgtgaaatccatagatttgggcctaatttatttcaattgactgatttccttatatgaactgtaactcagtaaaatatttgacatttttgtatgttgcatttatatttttgttccgtatataataaaaaataaaaaacaggcaGCTGAAGATTCTCTTGAAAGGCATGGCTTTAGTTATGCCACACGCGTCTCATGATTCATACAACAATAGGATTCTTTCCTCGCTATGCATTATCATCAAATTACAAATACACGTCCTACAACTTggcagcaaaaaaaaagaaagaaagaaaaaaagcttCCAAATATAGCAAACGCACGCTATTTCACATCAAATCACATGGCACCAGAACGCTGCACACACTGGAGAAACTGtctgtttcttgttgttgtttacaaTTACCCTTACATGGCACTTTGAATGGAGTAACCTTGTCTATCGGTCACACCTATGCAAAGAGAAaggactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181364 lncRNA upstream 20726 54192610 ~ 54192886 (+) True G158841
TU181362 lncRNA upstream 21442 54191842 ~ 54192170 (+) True G158839
TU181347 lncRNA upstream 126821 54086475 ~ 54086791 (+) True G158829
TU181336 lncRNA upstream 138429 54074964 ~ 54075183 (+) True G158818
TU181303 lncRNA upstream 181551 54031815 ~ 54032061 (+) True G158785
TU181462 lncRNA downstream 73601 54290098 ~ 54290351 (+) True G158939
TU181465 lncRNA downstream 75477 54291974 ~ 54292241 (+) True G158942
TU181467 lncRNA downstream 76703 54293200 ~ 54293458 (+) True G158944
TU181468 lncRNA downstream 77220 54293717 ~ 54294007 (+) True G158945
TU181469 lncRNA downstream 77679 54294176 ~ 54294411 (+) True G158946
XM_021565401.2 mRNA upstream 22025 54114973 ~ 54191587 (+) False dgkzb
XM_021565510.2 mRNA downstream 148421 54364918 ~ 54455954 (+) False itga11b
XM_021565519.2 mRNA downstream 148421 54364918 ~ 54455954 (+) False itga11b
XM_021565528.2 mRNA downstream 191161 54407658 ~ 54455954 (+) True itga11b
XM_021579388.2 mRNA downstream 257526 54474023 ~ 54486909 (+) True cln6b
XM_021565562.2 mRNA downstream 275228 54491725 ~ 54504596 (+) False calml4b
TU181296 other upstream 191708 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 2389430 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2792490 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2796494 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2891179 51321796 ~ 51322433 (+) True LOC110501653
TU181970 other downstream 136486 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 511799 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 1729646 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2028547 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 2831817 57048314 ~ 57053642 (+) True G162130

Expression Profile