RNA id: TU183011


Basic Information

Item Value
RNA id TU183011
length 1780
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G160381
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55827760 ~ 55829632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACAGAATGTTTTATTTAGGTTTACATACAGACACTCTAGAGAGCCATGCTACTGTAGTATAGTCAAATGCAAAACCATGCTCTCATTCCAGCTCCTATTGAAAAATAAGTAAAACCGTTATACCTTTAACCCATAGACTAGTTTGCAATCAAACCTACAGTAGTAGgtgtctgtgtatatatatatatatatatattttttttaaactattgtaGTGCAAACCGTTCATGTAATTTAAAATATCCTGGACAACACCAGTTGGCATACAAACAAGTTCAGAACAAATTATTTAAGTTATCGTTCTGTTCCCGTCCTTCATTCACAAATCGTAAGTAGATCATCGCTGTTCAATTGAAAGCACCAGGGTCATGCTCATTAAGCACAAAACAGAAACGGGGAGGTACAATCAGTACTTCTCCAATAAGAAACTAATTTTCCTTTTGCTACGATGTGCTCTAATGAACACCAACCAGGAGACATGCCTGACCCAACAGAGCTTCATTCAAAATGAATGAACAAACATACAAAATTTCACTTTTTTGACCTTTGGGGAAAGCTATTTTGAGTGTTTGAGAGACTACATTGCAGTCTGCGACTACAGACTGTCTGCTATACAAGTTATaatcagtagtcatttaggatGCAAGATGAGTCGGCAGTCTACAGTCACCAACTGCAATGCAGTCCCTCTCAAACACCAACTTTGTATCCTGTAATAGAGTGTGAGGTGTTACCATTGACACAGTACAGCTCACCTTCAGTCCAGACTACTGCTGAATGCATTTCTGTTGAATTGCATGGTCACATGATGCTTAAGCCTTACAGCATACATTTTCTTCAACTAAACCAACTTCAATGTTGGTGATCCAGCTGAAGAAAAGGCCTCCCCATACAGTAGCTATACATTCTTACTCTATGCTCTAGTTGTAAGTACACTATGTATGCGGCGCGCAAATATGCATGCGTGAATGGGCAGGTGCCTTTGTTCCGCAAACATGCACAGGAATCTCAGCATACTGTAAAACGCCAAATGTTCCCAATACAGCTGATATATTTAAAATACTCTGTTTTTGTTATGATGCATTGTCTTAAAAGCACTACTATTGAACAGAAGATTTCCCCCactgaaaaaaaaaaagcttAGAGGTAATTAATTACAACATGCTCAATTAAAAAAACCATCAGCAACGACAGAGTATGTGACACTTACAGCGAGATGTGAGCTGAGGCATACTGTACCAATGAAAACTCCATAATCACCGATACTGTGTAAACCTTCACAGAAACATGGGCCGAATAAAAAGGACCACAGCGAGTACACAAACCACAAGGGcgtgtatcacacacacacaagctgtgcATGTTCCTGTACCTGTCAGGGCGATTGTCTGAGAAAAATGAATGGAACTGCACATAGACTACAGTTAAAGAGGGGTTAAAACTGTTAGTAGGCCATCTTCAGTCTATCACTACTGGCCTTATGTCAGGGGACACCCCGGCATGACGAATGGGAGAACCACGGGTTGGGTTGATGTTGGTAGGTGACATTATCAGAAGGCCTGGGGCTACAGGAGACTGCAGGCCCGGTACATAGTCATTCCGGAGGGGGAGGTGATGTGAAGGGAGACGCTCTCATTGGCTGAGATGAAGAGGACAGTGCCCCGGCTCAGGGTGATGTCAGAGAGGGCAGCGGCGGAGGTGCCGGTGGCCTCGCCCTCAATCACCAGCAGGATGCCCGCACAGTCCACCGGGGCCACCGTGTACTGCCTGACTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183151 lncRNA upstream 57008 55770367 ~ 55770752 (+) True G160508
TU182814 lncRNA upstream 402307 55424236 ~ 55425453 (+) True znf609a
TU182778 lncRNA upstream 622035 55185590 ~ 55205725 (+) True G160184
TU182673 lncRNA upstream 750345 55010209 ~ 55077415 (+) True G160082
TU182721 lncRNA upstream 753657 55073529 ~ 55074103 (+) True G160127
TU183234 lncRNA downstream 103495 55933127 ~ 55933810 (+) True G160589
TU183270 lncRNA downstream 170751 56000383 ~ 56001041 (+) True G160619
TU183286 lncRNA downstream 189710 56019342 ~ 56019605 (+) True G160635
TU184205 lncRNA downstream 202076 56031708 ~ 56031913 (+) True G161494
TU184276 lncRNA downstream 260187 56089819 ~ 56090069 (+) True G161559
XM_036950868.1 mRNA upstream 8242 55592661 ~ 55819518 (+) False myo9ab
XM_036950837.1 mRNA upstream 8242 55660232 ~ 55819518 (+) False myo9ab
XM_036950830.1 mRNA upstream 8242 55660233 ~ 55819518 (+) False myo9ab
XM_036950841.1 mRNA upstream 8242 55660233 ~ 55819518 (+) False myo9ab
XM_036950857.1 mRNA upstream 8242 55660233 ~ 55819518 (+) False myo9ab
XM_036950922.1 mRNA downstream 11813 55841445 ~ 55857300 (+) True scamp2
XM_036950930.1 mRNA downstream 31790 55861422 ~ 55931584 (+) False LOC110491898
XM_036950939.1 mRNA downstream 31790 55861422 ~ 55931584 (+) False LOC110491898
XM_036950947.1 mRNA downstream 56908 55886540 ~ 55931584 (+) True LOC110491898
XM_021565842.2 mRNA downstream 202858 56032490 ~ 56056380 (+) False acanb
TU182462 other upstream 1098900 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 1474372 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 1805856 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 4003578 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 4406638 51420847 ~ 51421122 (+) True G155541
TU183214 other downstream 116511 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 415412 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 1218682 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 2098518 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 2386045 58215677 ~ 58216383 (+) True G163660

Expression Profile