RNA id: TU183286


Basic Information

Item Value
RNA id TU183286
length 264
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G160635
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56019342 ~ 56019605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatatagcctcgttaatgtttttcttattgtgttacttttcattattactttttattttagtctacttggtaaatattttcttaactcttcttgaactgcactgttggttacgggcttgtaagtaagcatttcacgggtaaagtctacacttgttgaattcggcgcatgtgacaaataaagtttgatttgatgtgatgttgaagaaactGTGTCTCCAGATAAAGCATGGGAGTGGCGAGTCTGTACATAATTAGTAACataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183270 lncRNA upstream 18301 56000383 ~ 56001041 (+) True G160619
TU183234 lncRNA upstream 85532 55933127 ~ 55933810 (+) True G160589
TU183012 lncRNA upstream 189710 55827760 ~ 55829632 (+) False G160381
TU184205 lncRNA downstream 12103 56031708 ~ 56031913 (+) True G161494
TU184276 lncRNA downstream 70214 56089819 ~ 56090069 (+) True G161559
TU184311 lncRNA downstream 111378 56130983 ~ 56131664 (+) True G161594
TU184388 lncRNA downstream 174089 56193694 ~ 56194674 (+) True G161662
TU184389 lncRNA downstream 176705 56196310 ~ 56197436 (+) True G161663
XM_036950930.1 mRNA upstream 87758 55861422 ~ 55931584 (+) False LOC110491898
XM_036950939.1 mRNA upstream 87758 55861422 ~ 55931584 (+) False LOC110491898
XM_036950947.1 mRNA upstream 87758 55886540 ~ 55931584 (+) True LOC110491898
XM_036950922.1 mRNA upstream 162042 55841445 ~ 55857300 (+) True scamp2
XM_036950849.1 mRNA upstream 199824 55660235 ~ 55819518 (+) True myo9ab
XM_021565842.2 mRNA downstream 12885 56032490 ~ 56056380 (+) False acanb
XM_036951010.1 mRNA downstream 12885 56032490 ~ 56056380 (+) False acanb
XM_036951011.1 mRNA downstream 13012 56032617 ~ 56056380 (+) False acanb
XM_036951012.1 mRNA downstream 17015 56036620 ~ 56056380 (+) False acanb
XM_036951013.1 mRNA downstream 17038 56036643 ~ 56056380 (+) True acanb
TU183214 other upstream 72097 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 1290482 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 1665954 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 1997438 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 4195160 51816510 ~ 51824182 (+) False G156000
TU184425 other downstream 225439 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 1028709 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 1908545 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 2196072 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 3926103 59945708 ~ 59953165 (+) True G166131

Expression Profile