RNA id: TU184612


Basic Information

Item Value
RNA id TU184612
length 425
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G161858
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56334488 ~ 56334912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttatcagtctctcggtcccagctttgatgcacctgtacggacctcgccttctggatgatagcggggtggacaggctgtggctcgggtggttgatgtccttgatgatctttttggccttcctatggcatcgggtgctgtaggtgtccaggagggcgGGAAGTTTGTCCCCGGTAATacattgggcagaccgcaccaccctctggagagctttgcgggtgtgggcggtgcagttgccgtaccaggaggtgatacagcccgacaggatgctctcaattgtgcatctttaAAAGTTTATGAGGGTTTTAGGTGTTAAGCCAAATTTCAtgagcctcctgaggttgatgaggcgctgttgcgccttattcaccacgctgtctatgtgggtggaccatttcagttcgtcagtgatgtgtatgtcgagga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184611 lncRNA upstream 872 56332972 ~ 56333616 (+) True G161857
TU184570 lncRNA upstream 33149 56300871 ~ 56301339 (+) True G161821
TU184462 lncRNA upstream 35084 56299084 ~ 56299404 (+) True G161724
TU184460 lncRNA upstream 37406 56296851 ~ 56297082 (+) True G161722
TU184454 lncRNA upstream 45205 56288952 ~ 56289283 (+) True G161716
TU184616 lncRNA downstream 717 56335629 ~ 56335917 (+) True G161862
TU184620 lncRNA downstream 1507 56336419 ~ 56336621 (+) True G161866
TU184644 lncRNA downstream 26695 56361607 ~ 56362081 (+) True G161886
TU184656 lncRNA downstream 45711 56380623 ~ 56382309 (+) True G161893
TU184731 lncRNA downstream 138848 56473760 ~ 56474977 (+) True G161949
XM_036951018.1 mRNA upstream 105411 56207828 ~ 56229077 (+) False LOC110492043
XM_036951017.1 mRNA upstream 105411 56210763 ~ 56229077 (+) True LOC110492043
XM_021565950.2 mRNA upstream 163524 56146461 ~ 56170964 (+) False LOC110491996
XM_021566172.2 mRNA downstream 151785 56486697 ~ 56497109 (+) False LOC110492132
XM_021566180.2 mRNA downstream 151789 56486701 ~ 56497109 (+) True LOC110492132
XM_036951024.1 mRNA downstream 172724 56507636 ~ 56518535 (+) False LOC110492152
XM_021566210.2 mRNA downstream 172735 56507647 ~ 56518535 (+) False LOC110492152
XM_036951022.1 mRNA downstream 174673 56509585 ~ 56518535 (+) False LOC110492152
TU184425 other upstream 81890 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 387243 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 1605628 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 1981100 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2312584 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 713402 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 1593238 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1880765 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 3610796 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 4180720 60515632 ~ 60515880 (+) True G166878

Expression Profile