RNA id: TU184656



Basic Information


Item Value
RNA id TU184656
length 1183
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G161893
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56380623 ~ 56382309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCCTTGGAAGAGGAGTACACAGTCAGAAGAGGGACAGGGTACATGCCACTGGCAGAGGAGATGTTGAGGACCACACCTTTGGACCTGAAACCACAAAAACCAAAAGGGAATTAGAAGTTGTTTTTTCCTGCCATGGAGTGCCAAAAGAGCCTCCTGTCCATCACAAGAGTACAAGCAGCCTAGTGCCACTGTAGACTGCCATACACACTAATCATAGTCGCTGTGCGGGTTGCCATGGCAGCGGCTTGCTTACGCATTTAGCACTCCGGTTGCTGCAGTGATGTAGTGAAAAAGGGGTTGGTTTGCCCCTCACGGCACCAAATGTGCCCCGCCTTCCCATTGGCGCAGAGAGCCCATGTGATTCGTCAGAGCCAATCGGAAGAGGGTGCACCCTCTCCACCATTCTGGGTAGAACTAGACGAGTCATCTGAAAAGGGAGCAGGGAAAGAAAGGTGAACTCCTGAGCAAACAGTTCGATTACCTGACAAAACAGCATGGTCAGGAATCACACATGAAATAAGTCAAACAGGACACCATTATATGTAAATATTCAACTTCAAGACAAATTTCCATTTCGATAGATGCTAACACAACCTATACAttgtttcattttttaaaataaaatactgaAATGGCAAGGGAATGAAGTCACACAGGACCAGCGAGGAAGTTCACATTACCGCTACAGATTCCACCCAGcggcattatgggagatgtataGCACACTGGTACATTTCAGCCGCGTAGGAAGCAAGGGCGAGCGAGAGAAGGAACGAGAGAAATCGGGGGAAGAAGTGGTGGTGCGTGGGTGGTGAACACAGACAGTGTTGGTGTAGTTCACCGTTGCTCTGGGAACCACAGGTAGCACGGCAGCAACAGTGGCAGAGAGGAAAGAGGATGAAGAGGAAGCGTGAAAGATGGACGCCCATCGACATGCCACCTGCGCCACTGTACGGTTGACACATTGTAACACTAAACTCCCTGAACTTTGCCGCAGACTGACAAGGTGCACACAACCTGTGCACTAAAAATAAAATAGCTGAAAAACTAGATGAATATCTATGGTATAGACATGCATAGCTGCCCCGTGGTATAGATTTATACACACAGAACTGCTACAGAAGCAAGAGAACTCTTACCTGGCAAACGGAGGTCATGTTGACATTGATCATGTTGGTGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184644 lncRNA upstream 18542 56361607 ~ 56362081 (+) True G161886
TU184620 lncRNA upstream 44002 56336419 ~ 56336621 (+) True G161866
TU184616 lncRNA upstream 44706 56335629 ~ 56335917 (+) True G161862
TU184612 lncRNA upstream 45711 56334488 ~ 56334912 (+) True G161858
TU184611 lncRNA upstream 47007 56332972 ~ 56333616 (+) True G161857
TU184731 lncRNA downstream 91451 56473760 ~ 56474977 (+) True G161949
TU184740 lncRNA downstream 122046 56504355 ~ 56504559 (+) True G161956
TU184748 lncRNA downstream 139425 56521734 ~ 56521968 (+) True G161964
TU184772 lncRNA downstream 165688 56547997 ~ 56597839 (+) True G161987
TU184769 lncRNA downstream 168389 56550698 ~ 56611209 (+) True G161984
XM_036951018.1 mRNA upstream 151546 56207828 ~ 56229077 (+) False LOC110492043
XM_036951017.1 mRNA upstream 151546 56210763 ~ 56229077 (+) True LOC110492043
XM_021565950.2 mRNA upstream 209659 56146461 ~ 56170964 (+) False LOC110491996
XM_021566172.2 mRNA downstream 104388 56486697 ~ 56497109 (+) False LOC110492132
XM_021566180.2 mRNA downstream 104392 56486701 ~ 56497109 (+) True LOC110492132
XM_036951024.1 mRNA downstream 125327 56507636 ~ 56518535 (+) False LOC110492152
XM_021566210.2 mRNA downstream 125338 56507647 ~ 56518535 (+) False LOC110492152
XM_036951022.1 mRNA downstream 127276 56509585 ~ 56518535 (+) False LOC110492152
TU184425 other upstream 128025 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 433378 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 1651763 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2027235 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2358719 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 666005 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 1545841 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1833368 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 3563399 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 4133323 60515632 ~ 60515880 (+) True G166878

Expression Profile