RNA id: TU185502


Basic Information

Item Value
RNA id TU185502
length 3242
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G162657
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56827296 ~ 56830576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACTGAGATCCAGGTCATAGTCGAGGGGCTCCATGTCCGTCTCCCTCATGGGTGTGGCAATCGTGGGCATGGCCATCACCGAGAGCCACTCATCTGATTGgatcctctccctttccttcagCTCGCTACGCCCCTCGTCGCTCTGGCCCTCGGCAACCTGTCGCTCTTCCACCTGAGCTTTCTGCACCAGCTGCAAATCAAAGTCCTGCTGCTCTCGCCTCCACTAGGGGGAGACAGACACAACCATTACTTTATCTGACCACTAGGGGGAGACATACACAACCATTACTTTATCTGACCACTAGGGGGAGACAGACACAACCATTACTTTATCTGACCACTAGTGAAGGGGCAAACAACGATTACTTTATCTGACCACGAGGGAGACAGACTTCTACTTCATCTGACCACTGGGGGGGACAAACACAACAGTTACTTTATCTGACCACTGGGGGGGACAAACACAACAGTTACTTTATCTGACCACTGGGGGGGACAAACACAACAGTTACTTTATCTGACCACTGGGGGGGACAAACACAACAGTTACTTTATCTGACCACTGGAGGGGACAAACACAACAGTTACTTTATCTGACCACTGGGGGGGACAAACACAACAGTTACTTTATCTGACCACTGGAGGGGACAAACACAACAGTTACTTTATCTGGTTGATTTTCAgaggcaaaaaaaacaaaaacaaaaaaaacgtattatttcacactaagagacaacacaacaccagcACAGATTGGACCACCCTGTGTAGAACCCGGAGAAAATAAACCGTAAAGTAATGGAGCTGATTTCACAGCACAAATCCTAGTCCCATGAGGATGGACAGCTTCTGTGTTGCAGGGACAAATGGAGTCTTGAGGAGTGAGGACCATGCATCCGAAATCTTGTCTTTCTTGGCTTCTGCATTGTCACCACAGGACGTCCCTACGGTGTCTCCATTCCACCACCAGCAACTTCATTGCATTTAATTGTTTTCAGGATCACCAGAAAGAGGATTTCATTATTAGATTAATGACAGCAACATAAAGAAGCAACCACCAAAAGGATACTGATTAACCTGTTACCACACACACATTTGCTTTTCCAAAAACATACATAAACACATTTGTGTTGTGAGTAAATATCTGTTTGTACTGTATGCGTGTTGTTATGTGTGTGTCCTAGCCCTCAAACCCATGCATGCATCATTGCCACTCCTGTGCGTGTAGGCCTCCCATGATGTGAGGAGAAAGTGCATCACATGCGTTATTgtgctaacccccccccccccccccccccaacagggaAAATACATGCATTACATATTCATCAAACCCCCGCAAAAATggaaacacacagccagaggtGATTTATTTAGTTTTTTGAAGCAAAATGATTTTATTCTCGAGCGCAAATCTCTACATTGGAAAATAACAGGCGTGAAGGAGCTGTGCGTTGCCTCTCAGTATAATTTAGCATTCGCTAGTGTCTCTAGTGACTTCCTTTCTCTGTGCAATTTTCTGTACATCCTCGctgctaaaaaaaataaatcaaGCAATTTGGACGGGGAAAAGCAACATGGTGGAATTTACACCTGCCTTGACGGTAAGCTGGCGGCAGccattttaccccccccccccccctcctgtcctTTCATTTGCAGTGAAGCAGATCAAATAGGCTTAATACTCTCTCACTATGACCTTGACTGTAGAAGTAGGCCGTTGTAGCGATCAACCACGGTTAAGTACAAAAGTCTTTGTGATAAAAGGCTGTGATAATGTCGATGTAGCAGAAACTAAAAACTAAATGCTGTGAATAAGCGACTGTTTAGTGTGTCAATGGTGGGGAAAAAAACGATTCAaatgccccccccaaaaaaagagggAGCCTAAAATCTCTTGGCTATTACGGTGAAGCGTTACAAAATGTAATTTAGTAACCAGCAGGAGTTGACCTACGTGTTGCCAAATGTTAGTAGGAGCTTTGGGAACACAAGGGTTGATGGCAAATGTAGCAAGGAGTTTGAGGGTATTGATGATCTCACAGCAATCTGGTTAAGATTGTGTGTTAGATAATATATTAGATGGTTAAATTAGTCTTCGTAAGGTTGACTCTCCTACGTTGGCACGCACAACAAACCTCAAACAGACATAAGACAACTATCTGAAAGCTCATTTGAATGGGATTCGGTGGTAGCCATAGCACGCCATAGCACGCCATAAGACAAACAGGGTGGAAAAAGGTGAGGCTGAAGGAGAATCTGGTGAGAAGAGGAATGATTATTCACCGGGAACTAAAGGCACTTTGATTTCATTCGATTCATTCCATttgaaagatggagggaggagggcggTTTGATAATGATTTGTGCCACTTCCCACCGAGTTGATTGGTTCAAATAACGATACACATTTCCCCATCCCTCATTTTATCAAATCTctataaaatataattttacaAATGTATAGGCTACTGAAAATATCCTTCAGTAAATAAATACTAATGTACATAAGTGTAAATGTACATAGAATGGGCTTTTCTTTTCTCGTGACAGAGGGGGAAGGCAGAGCTATGCCTGTAGCCaatccccctcttcttctccttgaaatacattcagtgtgtgtcagtgaggTACCGCACGGGGGCACCAGTGATCGGGGAAACGCAACCCATACACCTTCATATGGGGAACAGCTCTGTCTTTACAGTCCCCATCTTCGACAGATATCCCCTCCCCTACTCTCCCAAGCTGCCTCCACCACGCACAGTCCAACCGCTCTATAAGCCCAGCCAGCCACGGCTTTGTCCCATCCAGTCCCACCGGCCCTTCGCGTGCTAGCACGGTGCTAACGCTTACTCATGTTAGTGCCATTGGTTACACATGGGGGAGAGGGTGAGTAGGGGATGTTAGCATGTTAGCAATTGCGGCGGCGCCTATGTGGGGGGTTCGGCGGGGGGGCGGCAGTGGCAGTGGTCCCTGCTTCTGCTGCGGGGGTAACGTACTGAGCCCaggtcagtggaggagagagccctggtggaggaggaggtacgaTGAGCAGTGTTGGAGTGGCGTTCTCCCTGGCTGAGGTTCCTCTTGCGCTCGCGCACCAGggccctctggtgcctcttcatgCGCTCCAGCTGCTCCTCTGCACTCATGCGGCCCCGGGGGGCCTGGGCCAGAGGCTGGGGCTGCTGGCCAGAGGAGTACAGCTGCTCCAAAGCACTCTTAGGTCTCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185508 lncRNA downstream 10538 56816162 ~ 56816758 (-) True G162662
TU185484 lncRNA downstream 30129 56795295 ~ 56797167 (-) True G162647
TU185402 lncRNA downstream 163305 56663784 ~ 56663991 (-) True G162565
TU185397 lncRNA downstream 170044 56656849 ~ 56657252 (-) True G162560
TU185198 lncRNA downstream 340852 56484556 ~ 56486444 (-) False c2h12orf73
TU185632 lncRNA upstream 157649 56988225 ~ 56989720 (-) True G162781
TU185649 lncRNA upstream 182536 57013112 ~ 57013337 (-) True G162797
TU185650 lncRNA upstream 183900 57014476 ~ 57015002 (-) True G162798
TU185654 lncRNA upstream 192600 57023176 ~ 57023474 (-) True G162801
TU185643 lncRNA upstream 196709 57027285 ~ 57027775 (-) True G162791
XM_036951029.1 mRNA downstream 266509 56547837 ~ 56560787 (-) True LOC110492166
XM_021566231.2 mRNA downstream 267366 56547837 ~ 56559930 (-) False LOC110492166
XM_021566219.2 mRNA downstream 285762 56527654 ~ 56541534 (-) True LOC110492158
XM_036951021.1 mRNA downstream 340636 56484556 ~ 56486660 (-) False c2h12orf73
XM_021566192.2 mRNA downstream 342826 56479441 ~ 56484470 (-) True si:dkey-42p14.3
XM_021566704.2 mRNA upstream 5234 56835810 ~ 56838821 (-) True LOC110492408
XR_005037355.1 mRNA upstream 137572 56968148 ~ 56971786 (-) True LOC118941078
XR_005037354.1 mRNA upstream 203860 57034436 ~ 57036781 (-) False LOC118941077
XM_021566563.2 mRNA upstream 217735 57048311 ~ 57088772 (-) False zgc:113516
XM_021566546.2 mRNA upstream 217735 57048311 ~ 57089862 (-) False zgc:113516
TU184572 other downstream 525201 56301355 ~ 56302095 (-) True G161823
TU184134 other downstream 883731 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 2098436 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 2558943 54257426 ~ 54268353 (-) True ambra1b
TU181692 other downstream 2855957 53969443 ~ 53971339 (-) True cd59
TU185596 other upstream 283991 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 409703 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 413805 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other upstream 414259 57244835 ~ 57250107 (-) True LOC100135818
TU186027 other upstream 502502 57333078 ~ 57333902 (-) True c2h11orf16

Expression Profile