RNA id: TU185650


Basic Information

Item Value
RNA id TU185650
length 527
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G162798
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57014476 ~ 57015002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttatatttatttatttttgacacTTCATTCAGAGAGTAAGGAAATCAAACAGGCATgtgggagaaagagtgagaaggACGGGATTGAACCCTGGTCTCCGGTGGGGAGTTTTATATGCCACATGCCAGGGAGTATTACCACTTGACCACAGCTCTGCCATCTTACCCAGGATCTTGCTGATGTTGGAATTGTGCATGTCGGGGAAGGTCTGCAGGATCTTCCTCCTCTCGTCCTTGGCCCACACCATGAAGGCATTCATGGGTCTCTTAATGTGGGGCTCAGTACTGTTCCTTCCCCTGGTCTCCCTGAAGACCCGGGCCTCTGTAGTGCAGGAGACACCTGTGGGAAGGGAGGGCCATTTCATGACttactcaatcactcactcgttCGTGTAAAAAAACTTTTAAGCCACAGAGTACATACATTGCACAGTATGTCTAAGAGCGTGGCTTCCAGACAGTGAGGGAGGGGAcaattgaaagtgtgtgtgtgtgtgtgtgtgtgcacttgtgttTTACAGTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185649 lncRNA downstream 1139 57013112 ~ 57013337 (-) True G162797
TU185632 lncRNA downstream 24756 56988225 ~ 56989720 (-) True G162781
TU185502 lncRNA downstream 183900 56827296 ~ 56830576 (-) True G162657
TU185508 lncRNA downstream 197718 56816162 ~ 56816758 (-) True G162662
TU185484 lncRNA downstream 217309 56795295 ~ 56797167 (-) True G162647
TU185654 lncRNA upstream 8174 57023176 ~ 57023474 (-) True G162801
TU185643 lncRNA upstream 12283 57027285 ~ 57027775 (-) True G162791
TU185644 lncRNA upstream 12997 57027999 ~ 57028816 (-) True G162792
TU185595 lncRNA upstream 20727 57035729 ~ 57039319 (-) True LOC118941077
TU185669 lncRNA upstream 60328 57075330 ~ 57077421 (-) True G162816
XR_005037355.1 mRNA downstream 42690 56968148 ~ 56971786 (-) True LOC118941078
XM_021566704.2 mRNA downstream 175655 56835810 ~ 56838821 (-) True LOC110492408
XM_036951029.1 mRNA downstream 453689 56547837 ~ 56560787 (-) True LOC110492166
XM_021566231.2 mRNA downstream 454546 56547837 ~ 56559930 (-) False LOC110492166
XM_021566219.2 mRNA downstream 472942 56527654 ~ 56541534 (-) True LOC110492158
XR_005037354.1 mRNA upstream 19434 57034436 ~ 57036781 (-) False LOC118941077
XM_021566563.2 mRNA upstream 33309 57048311 ~ 57088772 (-) False zgc:113516
XM_021566546.2 mRNA upstream 33309 57048311 ~ 57089862 (-) False zgc:113516
XM_036951362.1 mRNA upstream 33309 57048311 ~ 57118294 (-) True zgc:113516
XM_036951292.1 mRNA upstream 137916 57152918 ~ 57203499 (-) False LOC110492288
TU185501 other downstream 183900 56827296 ~ 56830576 (-) False G162657
TU184572 other downstream 712381 56301355 ~ 56302095 (-) True G161823
TU184134 other downstream 1070911 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 2285616 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 2746123 54257426 ~ 54268353 (-) True ambra1b
TU185596 other upstream 99565 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 225277 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 229379 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other upstream 229833 57244835 ~ 57250107 (-) True LOC100135818
TU186027 other upstream 318076 57333078 ~ 57333902 (-) True c2h11orf16

Expression Profile