RNA id: TU185045


Basic Information

Item Value
RNA id TU185045
length 277
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G162241
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57033156 ~ 57033721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATACCCCGTTCTATTCGTGTCATTTTGGGAACCGATTTAAATGTGGCCTATTGTTCTTTTCCTCCAATAAGTCAAAATCATTTATATTTCCCTTCTTTCCCCCCCAATGTTTTTATAGGATGTACAGTTAGTCGTACACCAGATAAATAGAAAGgatcagttgtgtgtgtgtgagtatgtggggttacatgtgtgtgtgaatgtgtgtgtgtactgtatgtgtgtatcagaggaggctggttggAGGAGTTATagaaggacaggctcattgtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185044 lncRNA upstream 492 57030086 ~ 57032664 (+) True G162240
TU184932 lncRNA upstream 5381 57027288 ~ 57027775 (+) True LOC110492317
TU185043 lncRNA upstream 8632 57024255 ~ 57024524 (+) True G162239
TU185035 lncRNA upstream 16845 57016061 ~ 57016311 (+) True G162231
TU185034 lncRNA upstream 17922 57015020 ~ 57015234 (+) True G162230
TU185046 lncRNA downstream 286 57034007 ~ 57034367 (+) True G162242
TU185047 lncRNA downstream 913 57034634 ~ 57035657 (+) True G162243
TU185048 lncRNA downstream 1959 57035680 ~ 57036444 (+) True G162244
TU185050 lncRNA downstream 5889 57039610 ~ 57040022 (+) True G162246
TU185051 lncRNA downstream 6569 57040290 ~ 57041826 (+) True G162247
XM_036951218.1 mRNA upstream 5378 56870028 ~ 57027778 (+) False LOC110492317
XM_036951247.1 mRNA upstream 5378 56870028 ~ 57027778 (+) False LOC110492317
XM_036951228.1 mRNA upstream 8233 56869081 ~ 57024923 (+) False LOC110492317
XM_036951237.1 mRNA upstream 8233 56870398 ~ 57024923 (+) False LOC110492317
XM_036951144.1 mRNA upstream 197970 56767663 ~ 56835186 (+) False LOC110492194
XM_021566614.2 mRNA downstream 255771 57289492 ~ 57302882 (+) True LOC110492362
XM_021566755.2 mRNA downstream 292607 57326328 ~ 57329184 (+) True rpl27a
XR_005039481.1 mRNA downstream 293668 57327389 ~ 57327520 (+) True LOC118944169
XR_005039480.1 mRNA downstream 294599 57328320 ~ 57328450 (+) True LOC118944168
XM_021566728.2 mRNA downstream 296675 57330396 ~ 57331987 (+) False akip1
TU184425 other upstream 780558 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1085911 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2304296 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2679768 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 3011252 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 14593 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 894429 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1181956 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2911987 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3481911 60515632 ~ 60515880 (+) True G166878

Expression Profile