RNA id: TU185051


Basic Information

Item Value
RNA id TU185051
length 1537
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G162247
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57040290 ~ 57041826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTAGGCTGACAGTgcgttacgttacagctttattctaatatatatatatattttatttccctctcatcaatctacacacaacaccccataatgttaaagcaaaaacatatacattttacaacaaataaaaaagtattcagagcctttactcagtactttgttgaagcacccttggcaacgattacagcctatagtcttcttgggtatgatgctagtgtaaccgatgtgaaatggctaggtCGTTCGCAAGGTGCGCGCTaatggcgtttcaatcggtgacgtcactcgctctgagatcttgaagtagttgtttcccttgctctgcaagggccgaggcttttgtggagcgatgggtaacgatgcttcgagggtaactgttgtcaatgtgtgcagagggtccctggttcgaacccaggtagggacgaggagagggacggaagctaaactGTTGCATTGGTGCCGTAACTCGGATCAcaggttgctgcggaaaaggagaaGGTCaatgtaactgatgtgaaatggctagctagtttgcggagttcgagcccaggtagcggcgaggagagggacggaagctaaactgttacactacaagcttggcacacctgtatttggggagtttatttcattcttctctgcagatcctctcaagctctgtcacgttggatggggagcatcgctgcacagatattttcaggtctctccagagatgtcaagtctgggctctggttgggccactcgaggacattcagaaacttgtcccaaagccactcctgcattgtcttggctgtgtgcttagggtcaatgccctgttggaaggtaaactttcaccccagtctgaggtcctgagcgctctggagcaggttttaatcaaggatctctctgtcctctctgtctctgctacattcatctttcccttgagcctgactattctcccagtccctgcagctgaaaaacatccccgcaatatgatgctgccaccgccatgcttcaccgtagggatggtatgggcctggtgatgagcggtgcctggtttcctccagatgtgaagcttggcagtcaggccaaatagttcaatcttggtttcatcagaccagagaatattgtttctcatggactgAAAGTcctgtaggtgccttttggcaaactccaagcaggctgtcatgtgccttttactgaggagtggcttctgtctggccactctaccacaaaggcctgattggtggagtgctgcagagatggttgtccttctggaaggttctcccatctccacagaggaactctagagctctgtcagagtgaccatcgggttcttggtcacctccttaaCTAAGACCATTCTACcgcgatttctcagtttggctggtggccaggtctaggaagcatattggtggttccaaacttcttccatttaagaatgaataGAGAACActgagttcttggggaccttcaatactgcccaaaaatgttggtacccttccccagatctgttcctcaacacaatcctttctcagcactctatggacaattccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185050 lncRNA upstream 268 57039610 ~ 57040022 (+) True G162246
TU185048 lncRNA upstream 3846 57035680 ~ 57036444 (+) True G162244
TU185047 lncRNA upstream 4633 57034634 ~ 57035657 (+) True G162243
TU185046 lncRNA upstream 5923 57034007 ~ 57034367 (+) True G162242
TU185045 lncRNA upstream 6569 57033156 ~ 57033721 (+) True G162241
TU185052 lncRNA downstream 318 57042144 ~ 57042404 (+) True G162248
TU185053 lncRNA downstream 651 57042477 ~ 57042963 (+) True G162249
TU185054 lncRNA downstream 1269 57043095 ~ 57043455 (+) True G162250
TU185055 lncRNA downstream 1762 57043588 ~ 57043809 (+) True G162251
TU185068 lncRNA downstream 25001 57066827 ~ 57067227 (+) True G162264
XM_036951218.1 mRNA upstream 12512 56870028 ~ 57027778 (+) False LOC110492317
XM_036951247.1 mRNA upstream 12512 56870028 ~ 57027778 (+) False LOC110492317
XM_036951228.1 mRNA upstream 15367 56869081 ~ 57024923 (+) False LOC110492317
XM_036951237.1 mRNA upstream 15367 56870398 ~ 57024923 (+) False LOC110492317
XM_036951144.1 mRNA upstream 205104 56767663 ~ 56835186 (+) False LOC110492194
XM_021566614.2 mRNA downstream 247666 57289492 ~ 57302882 (+) True LOC110492362
XM_021566755.2 mRNA downstream 284502 57326328 ~ 57329184 (+) True rpl27a
XR_005039481.1 mRNA downstream 285563 57327389 ~ 57327520 (+) True LOC118944169
XR_005039480.1 mRNA downstream 286494 57328320 ~ 57328450 (+) True LOC118944168
XM_021566728.2 mRNA downstream 288570 57330396 ~ 57331987 (+) False akip1
TU184425 other upstream 787692 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1093045 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2311430 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2686902 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 3018386 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 6488 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 886324 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1173851 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2903882 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3473806 60515632 ~ 60515880 (+) True G166878

Expression Profile