RNA id: TU185053


Basic Information

Item Value
RNA id TU185053
length 487
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G162249
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57042477 ~ 57042963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTTTTGTTCAAGTGTTCTACTCCTCTCACCTAAACATGTGTGCGTTTATTTCACCTCCAGTAGTGTTTATCCCActgcacagtccccgcagccggaccaTTTTCTGACAGCTGTGGGGCATTCTCAACCGGTGTTGCTCATTTAGCCGATATACATTTTCAACCGTTTTTCCCCGCTAAGCAAGAGTCAGAGCCCGAGCCTTCCCAAGTCTTTCCTCCACCTGTTACGTGGTCTGAgtcgccgaagcctcccaccactagctctgacaaattgaaataGCCTAGTCATTGGTGACTCCATTATTCGCAATATTAAGAGATACAaataatcatccagcgatcatggTTTGGTTACCAGGGAGCAGGGCTACTGACCtaaaaggctaatctgaagacgGTGCTGGCTGAGGCTAAAATTGGCGAGTGTAGATGgcatagggatattgttatccatgtCGGCACCAACAAATTATAttaatcacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185052 lncRNA upstream 73 57042144 ~ 57042404 (+) True G162248
TU185051 lncRNA upstream 651 57040290 ~ 57041826 (+) True G162247
TU185050 lncRNA upstream 2455 57039610 ~ 57040022 (+) True G162246
TU185048 lncRNA upstream 6033 57035680 ~ 57036444 (+) True G162244
TU185047 lncRNA upstream 6820 57034634 ~ 57035657 (+) True G162243
TU185054 lncRNA downstream 132 57043095 ~ 57043455 (+) True G162250
TU185055 lncRNA downstream 625 57043588 ~ 57043809 (+) True G162251
TU185068 lncRNA downstream 23864 57066827 ~ 57067227 (+) True G162264
TU185072 lncRNA downstream 26393 57069356 ~ 57071014 (+) True G162267
TU185076 lncRNA downstream 31540 57074503 ~ 57164836 (+) True G162270
XM_036951218.1 mRNA upstream 14699 56870028 ~ 57027778 (+) False LOC110492317
XM_036951247.1 mRNA upstream 14699 56870028 ~ 57027778 (+) False LOC110492317
XM_036951228.1 mRNA upstream 17554 56869081 ~ 57024923 (+) False LOC110492317
XM_036951237.1 mRNA upstream 17554 56870398 ~ 57024923 (+) False LOC110492317
XM_036951144.1 mRNA upstream 207291 56767663 ~ 56835186 (+) False LOC110492194
XM_021566614.2 mRNA downstream 246529 57289492 ~ 57302882 (+) True LOC110492362
XM_021566755.2 mRNA downstream 283365 57326328 ~ 57329184 (+) True rpl27a
XR_005039481.1 mRNA downstream 284426 57327389 ~ 57327520 (+) True LOC118944169
XR_005039480.1 mRNA downstream 285357 57328320 ~ 57328450 (+) True LOC118944168
XM_021566728.2 mRNA downstream 287433 57330396 ~ 57331987 (+) False akip1
TU184425 other upstream 789879 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1095232 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2313617 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2689089 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 3020573 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 5351 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 885187 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1172714 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2902745 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3472669 60515632 ~ 60515880 (+) True G166878

Expression Profile