RNA id: TU185076


Basic Information

Item Value
RNA id TU185076
length 275
lncRNA type read_through
GC content 0.37
exon number 2
gene id G162270
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57074503 ~ 57164836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttgttcttaactgacttgcctagtaaaataaaaaaattaactgGCATTgggttgtgtaacaaaactgcacattttagaatggccttttgtccccagcacaaggtgcacctgtgtaatgatcgttctgtttaatcagtttcttgatatgccacacctgtcaggtggatggattatcttggcaaaggataaatgctcactaatagggatgtaaacaaatttgtgcacaaaatgtgagagaaatatgttttttgtgcacatagaacatttctggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185072 lncRNA upstream 3489 57069356 ~ 57071014 (+) True G162267
TU185068 lncRNA upstream 7276 57066827 ~ 57067227 (+) True G162264
TU185055 lncRNA upstream 30694 57043588 ~ 57043809 (+) True G162251
TU185054 lncRNA upstream 31048 57043095 ~ 57043455 (+) True G162250
TU185053 lncRNA upstream 31540 57042477 ~ 57042963 (+) True G162249
TU185782 lncRNA downstream 112967 57277803 ~ 57278015 (+) True G162922
TU185802 lncRNA downstream 145748 57310584 ~ 57310831 (+) True G162939
TU185807 lncRNA downstream 153634 57318470 ~ 57318680 (+) True G162944
TU185818 lncRNA downstream 181402 57346238 ~ 57346489 (+) True G162955
TU185912 lncRNA downstream 366114 57530950 ~ 57531175 (+) True G163047
XM_036951218.1 mRNA upstream 46725 56870028 ~ 57027778 (+) False LOC110492317
XM_036951247.1 mRNA upstream 46725 56870028 ~ 57027778 (+) False LOC110492317
XM_036951228.1 mRNA upstream 49580 56869081 ~ 57024923 (+) False LOC110492317
XM_036951237.1 mRNA upstream 49580 56870398 ~ 57024923 (+) False LOC110492317
XM_036951144.1 mRNA upstream 239317 56767663 ~ 56835186 (+) False LOC110492194
XM_021566614.2 mRNA downstream 124656 57289492 ~ 57302882 (+) True LOC110492362
XM_021566755.2 mRNA downstream 161492 57326328 ~ 57329184 (+) True rpl27a
XR_005039481.1 mRNA downstream 162553 57327389 ~ 57327520 (+) True LOC118944169
XR_005039480.1 mRNA downstream 163484 57328320 ~ 57328450 (+) True LOC118944168
XM_021566728.2 mRNA downstream 165560 57330396 ~ 57331987 (+) False akip1
TU184934 other upstream 20861 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 821905 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1127258 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2345643 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2721115 54352983 ~ 54353388 (+) True G159415
TU186506 other downstream 763314 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1050841 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2780872 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3350796 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 3686596 60851432 ~ 60866455 (+) False LOC110493059

Expression Profile