RNA id: TU186163


Basic Information

Item Value
RNA id TU186163
length 1080
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G163251
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57554439 ~ 57555634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taTCTCAAGCTGATCTGAATGTTTGCGGCCATTCTCATTATGTCACAATGTAAGAAATCAACATTAGCAGCATATTTCTGGGACAACTGCTCTTCTGAATGGCAATTTAGGAGAATTCAGTGTGGAAAATGACACTTTCATTTCCCTGCTGTAAAACAGTATAACAGCAGATATCTGTATCGGTAAGTTTTGTCCCCCCAAAAATCGGACCCAAATAACCTTATCGGTCAGGCTCTAGTTTTAATAGGGTAAATAACAGGAGGTGTGTCACTAAAACAATTGTACTATTGCAATTAGCTGGATTCCAATAGGCTTACCCATGACCAACAAAGCTCACTACCTCTTTAAATGAGTGCATATTTCCAAGCTCAACCATTATTAAAGAGAGCCACTCCTGTGCACACAAACAAATGACTAGCTGGGTGCAGTCCTCCTGTGGTTAGTAATGAAGGATTCAGTTCTTCACAACCACAACACACATTCAAGTATCTTCTTCATTGTTAGTGGCGAGTGATGGACAAGCGTGTCTAACGAAAGGGATCTTTGGACACAATCTTGGCGTTTACAAGTGAACAGCAGTCAGTGTGCTGGTTTAAATCCTGACCATCAAATCAGCTACTGATTCAAACCCGACAAACCAGATAACTGGCCAAAACTCAAAGCCAAATCAATCACATTGACCTCCTGCTGCTTCTATCTAATCTATGGGTACTGAGTAGAACTCTAAGCCTGGGTTATGAAGGCACTACTCTGCAGGTACTGAGTAGAGCTCTAGGCCTGGGTTATGAAGGCTCTACTCTGCAGGTACTGAGTCCGGGCCCTCGTCCCTCAGCATGTCCGTTTCAGGGCTAGGCAGGCCTTGGTCAGAGGTGGGCGTGTCGGCCTGCTCCTGGGAGAGGCCTTCGGAACACCGGCTTACATTCGGGGAAATTACGTCGGGGCTCGTGTCACATGACTCGGTGCTCTGCCCCGACATGGTGGCGGTGATCATCGTGGCGACACTGGGCGGGATGGGATCAAACTCGTCGTCCTCCAGGACCGGCGACTCGTGGGCGTCTGTGAGGGAGAGACTCAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186198 lncRNA downstream 5020 57549199 ~ 57549419 (-) True G163286
TU186196 lncRNA downstream 8290 57545869 ~ 57546149 (-) True G163284
TU186189 lncRNA downstream 21742 57532281 ~ 57532697 (-) True G163277
TU186137 lncRNA downstream 97275 57456593 ~ 57457164 (-) True G163232
TU186052 lncRNA downstream 105162 57446314 ~ 57449277 (-) False G163163
TU186159 lncRNA upstream 4274 57559908 ~ 57626915 (-) True G163248
TU186231 lncRNA upstream 24891 57580525 ~ 57581786 (-) True G163307
TU186227 lncRNA upstream 28341 57583975 ~ 57600218 (-) False LOC110492469
TU186251 lncRNA upstream 63730 57619364 ~ 57623508 (-) True G163325
TU186255 lncRNA upstream 73612 57629246 ~ 57629813 (-) True G163329
XM_021566455.2 mRNA downstream 214129 57332151 ~ 57340310 (-) False c2h11orf16
XM_036951336.1 mRNA downstream 243588 57302760 ~ 57310851 (-) True ric3b
XM_036990288.1 mRNA downstream 304298 57245938 ~ 57250141 (-) False LOC100135818
NM_001124214.1 mRNA downstream 304335 57246461 ~ 57250104 (-) False LOC100135818
XM_036990272.1 mRNA downstream 304985 57245938 ~ 57249454 (-) False LOC100135818
XM_036934003.1 mRNA upstream 40316 57595950 ~ 57601508 (-) False LOC110492469
XM_036951689.1 mRNA upstream 242145 57797779 ~ 57815303 (-) False LOC110492538
XM_021566945.2 mRNA upstream 242145 57797779 ~ 57815595 (-) False LOC110492538
XM_036951679.1 mRNA upstream 242145 57797779 ~ 57837766 (-) False LOC110492538
XM_021566953.2 mRNA upstream 242145 57797779 ~ 57842492 (-) False LOC110492538
TU186027 other downstream 220537 57333078 ~ 57333902 (-) True c2h11orf16
TU185975 other downstream 304332 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other downstream 304332 57244835 ~ 57250107 (-) True LOC100135818
TU185753 other downstream 313067 57240279 ~ 57241372 (-) True G162897
TU185596 other downstream 437289 57114567 ~ 57117150 (-) True G162745
TU186219 other upstream 39903 57595537 ~ 57600218 (-) False LOC110492469
TU186222 other upstream 39903 57595537 ~ 57600218 (-) False LOC110492469
TU186224 other upstream 39903 57595537 ~ 57600218 (-) True LOC110492469
TU186917 other upstream 220835 57776469 ~ 57789383 (-) True G163839
TU187105 other upstream 555707 58111341 ~ 58118221 (-) True G164003

Expression Profile