RNA id: TU186917



Basic Information


Item Value
RNA id TU186917
length 1242
RNA type TUCP
GC content 0.51
exon number 10
gene id G163839
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57776469 ~ 57789383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttttattaacaaatAATTCATATTTAATGTTACGAATATCATACATAATTAGAAAATAAAATTATAATATATAGCCCATGGTACAATTGCACTTTGGAAtgtcctcccctctttctcctcggTCACTTGTCCGCCTTGACGAAGGAGGCGAAGACACTGTCCTCTTTCTCCAGCAGCGCCTGGGGTCTGTCGTATTCTAGAATGAGCCCTCGCTTCATCACGATCACCAGGTCTGCTTTCAGGATGGTGTGGACACGATgTGCTATAGTAACCACTGTTCTATCAGCGAAGGCAGTCATCACCACCTTCTGTAAGATGCTTTCcGTGGCCATGTCTATAGAGGCTGTGGCTTCGTCCATGATGAGGATGCTAGACTTCCTGACGAAGGCTCTGGCCAGACAGAAGAGCTGTCTCTGGCCCTGGCTGAagttctcccctccctctgtcactgTGGCGTCCAGTCCTCCTGGTAGGGTCTTGACTACAGGTTTTAGCTGAGCGATGTCCAGAGCCTCCCACAGCATGTCATCAGTAGCCTTCATCTCTGGGTCCAGGTTAAACCGGATGGTTCCGCTGAATAAGATGGGGTCCTGGAGGATGATGGAGAATCGAGACCTCAGGGTCTGCAGAGGCAGCTTGGCGATGTCAATGTCATCTATGATGATACGCCCCTCGAACATGTCGACCATGCGAAAGAAGGCCAGGGAGAAGGAAGACTTCCCACTTCCTGTCCTGCCACAGATCCCCACCTTCTGCCCAGGGCTGATGTGTGCGTTGACTTGTTTGAGGACAGGTTTCAGGGTGGTGTCGTAACGCACACTCAGGTTCTCAATCTGAATCTCCCCCTGCTGTGGCCAGCCATCCGGCACCTGAGATgcagTGAGCAGTCCTTCATAGTTCTCAGGCTCAGTCTGCAGCAGACCATTGATTCTCTTGACTGAACCCAGCTGAACCTCCATGTCTGCCAGGTTACGAACCATCCAGTTCAGGTAGTTGGACACCATGAGTGCATAGGTGAGACCTAGTCCTACCAGGCCAGTGGAGAGGTGGTTATACAGAGAGTTAGAGATGGAGGCCACAGCTGCTATCAGAACCACACAGGCACCTATGTACTCCATGCGGACCTCTAGCCAGCGATTGGCTGCTGTGAGAAAGAGGGAGGCGATGTTGTTGGCATCAGTGAACTCCAGTAACCTCTGTCTGAACTTGGGCTCATACCTGGGAGGAGAGAACCATTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186912 lncRNA downstream 11346 57761150 ~ 57765123 (-) False G163837
TU186913 lncRNA downstream 14864 57761150 ~ 57761605 (-) True G163837
TU186894 lncRNA downstream 16140 57750249 ~ 57760329 (-) False G163825
TU186895 lncRNA downstream 25680 57738768 ~ 57750789 (-) False G163825
TU186898 lncRNA downstream 25680 57750249 ~ 57750789 (-) True G163825
TU186888 lncRNA upstream 5232 57794615 ~ 57794979 (-) True G163819
TU187046 lncRNA upstream 231711 58021094 ~ 58021476 (-) True G163944
TU187187 lncRNA upstream 468637 58258020 ~ 58259366 (-) True G164080
TU187211 lncRNA upstream 566023 58355406 ~ 58360739 (-) False LOC110492691
TU187306 lncRNA upstream 643422 58432805 ~ 58433005 (-) True G164195
XM_036934003.1 mRNA downstream 174961 57595950 ~ 57601508 (-) False LOC110492469
XM_021566455.2 mRNA downstream 436159 57332151 ~ 57340310 (-) False c2h11orf16
XM_036951336.1 mRNA downstream 465618 57302760 ~ 57310851 (-) True ric3b
XM_036990288.1 mRNA downstream 526328 57245938 ~ 57250141 (-) False LOC100135818
NM_001124214.1 mRNA downstream 526365 57246461 ~ 57250104 (-) False LOC100135818
XM_036951689.1 mRNA upstream 8396 57797779 ~ 57815303 (-) False LOC110492538
XM_021566945.2 mRNA upstream 8396 57797779 ~ 57815595 (-) False LOC110492538
XM_036951679.1 mRNA upstream 8396 57797779 ~ 57837766 (-) False LOC110492538
XM_021566953.2 mRNA upstream 8396 57797779 ~ 57842492 (-) False LOC110492538
XM_036951663.1 mRNA upstream 8396 57797779 ~ 57875596 (-) False LOC110492538
TU186219 other downstream 176251 57595537 ~ 57600218 (-) False LOC110492469
TU186222 other downstream 176251 57595537 ~ 57600218 (-) False LOC110492469
TU186224 other downstream 176251 57595537 ~ 57600218 (-) True LOC110492469
TU186027 other downstream 442567 57333078 ~ 57333902 (-) True c2h11orf16
TU185975 other downstream 526362 57244381 ~ 57250107 (-) False LOC100135818
TU187105 other upstream 321958 58111341 ~ 58118221 (-) True G164003
TU187106 other upstream 340026 58129409 ~ 58131373 (-) True LOC110492612
TU187140 other upstream 384276 58173659 ~ 58175088 (-) True G164037
TU187215 other upstream 573203 58362586 ~ 58363594 (-) True LOC110492691
TU188907 other upstream 1692574 59481957 ~ 59482314 (-) True G165742

Expression Profile