Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028389 |
| length | 863 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 4 |
| gene id | XLOC_014285 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 43314700 ~ 43338280 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051216 | cartilage development | biological_process |
| GO:0062023 | collagen-containing extracellular matrix | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050307-3 | Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within cartilage development. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including cartilage element; head; integument; notochord; and pectoral fin. Orthologous to human MATN1 (matrilin 1). |
| ensembl_id | ENSDART00000133158 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030038 | lncRNA | upstream | 63544 | 43250553 ~ 43251194 (+) | True | XLOC_014282 |
| TCONS_00030037 | lncRNA | upstream | 234900 | 43072693 ~ 43079838 (+) | False | XLOC_014278 |
| TCONS_00028378 | lncRNA | upstream | 234900 | 43074643 ~ 43079838 (+) | True | XLOC_014278 |
| TCONS_00028377 | lncRNA | upstream | 235060 | 43072693 ~ 43079678 (+) | False | XLOC_014278 |
| TCONS_00028372 | lncRNA | upstream | 287255 | 43024687 ~ 43027483 (+) | True | XLOC_014277 |
| TCONS_00028400 | lncRNA | downstream | 89146 | 43420765 ~ 43424145 (+) | True | XLOC_014287 |
| TCONS_00030040 | lncRNA | downstream | 215028 | 43546647 ~ 43549011 (+) | False | XLOC_014291 |
| TCONS_00030039 | lncRNA | downstream | 215028 | 43546647 ~ 43549011 (+) | True | XLOC_014291 |
| TCONS_00028407 | lncRNA | downstream | 261220 | 43592839 ~ 43599344 (+) | True | XLOC_014293 |
| TCONS_00028415 | lncRNA | downstream | 384351 | 43715970 ~ 43724855 (+) | False | XLOC_014297 |
| TCONS_00028387 | mRNA | upstream | 5142 | 43297546 ~ 43309596 (+) | True | XLOC_014284 |
| TCONS_00028386 | mRNA | upstream | 42406 | 43256986 ~ 43272332 (+) | True | XLOC_014283 |
| TCONS_00028384 | mRNA | upstream | 176998 | 43119698 ~ 43137740 (+) | False | XLOC_014281 |
| TCONS_00028390 | mRNA | downstream | 9496 | 43341115 ~ 43350352 (+) | False | XLOC_014286 |
| TCONS_00028391 | mRNA | downstream | 9557 | 43341176 ~ 43357457 (+) | False | XLOC_014286 |
| TCONS_00028392 | mRNA | downstream | 9805 | 43341424 ~ 43349581 (+) | True | XLOC_014286 |
| TCONS_00028393 | mRNA | downstream | 27456 | 43359075 ~ 43432415 (+) | False | XLOC_014287 |
| TCONS_00028394 | mRNA | downstream | 27504 | 43359123 ~ 43406238 (+) | False | XLOC_014287 |
| TCONS_00028380 | other | upstream | 233678 | 43080925 ~ 43081060 (+) | True | XLOC_014280 |
| TCONS_00028379 | other | upstream | 236859 | 43077744 ~ 43077879 (+) | True | XLOC_014279 |
| TCONS_00028365 | other | upstream | 399197 | 42915419 ~ 42915541 (+) | True | XLOC_014274 |
| TCONS_00028353 | other | upstream | 579453 | 42732688 ~ 42735285 (+) | False | XLOC_014270 |
| TCONS_00028342 | other | upstream | 977307 | 42337317 ~ 42337431 (+) | True | XLOC_014261 |
| TCONS_00028401 | other | downstream | 107782 | 43439401 ~ 43451947 (+) | False | XLOC_014288 |
| TCONS_00028411 | other | downstream | 333772 | 43665391 ~ 43665511 (+) | True | XLOC_014295 |
| TCONS_00028433 | other | downstream | 677854 | 44009473 ~ 44032164 (+) | False | XLOC_014312 |
| TCONS_00028436 | other | downstream | 2177246 | 45508865 ~ 45508981 (+) | True | XLOC_014316 |
| TCONS_00028450 | other | downstream | 2912001 | 46243620 ~ 46280931 (+) | False | XLOC_014327 |
