RNA id: TU186554


Basic Information

Item Value
RNA id TU186554
length 4076
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G163544
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57995304 ~ 57999495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttatttttatatagAGCCAAGACAAATACTAACTCTAATAGGGCTCAATACAGGGTGAATGAAAATAAAGAATAGCCAGTTAACCAAAAAAGGAACATAAAGGAAAAAAAATGCATATACCCGAGAGAACCAAAACATATAATACAGTCTAATAAAAGGCCTACCCAATAAATACAGTAACAACATCAACACTAGATCCATATGAATATTTATAGGCATAAAATCCTACAATTGTAGTGGTGGTCAATGCTCATTGTGAGTTATTTTGCTCTCATAATAAAATGGGATGGTCTTTATGTGTCATAGCACAGATAATATATTAACAAGcgaccgctctaacaatggaaattaATGTCCTCAACGATGGAAGGCAGGCAGAGGGAGGTGAGATCCTTCCAGCCAATGAAAGGGCAGATACAACAGTCACAACTCCGAtatgaagttttttttttaagttgccGAAATGCCAGGtgtccacttatatcagtgcattcgtaacaacataaccattacgaaacttctattcaATCAAATTAGCCGGGCGTAGCAAATGAGGAATGACATTTTAAGTTGCCTAAATTCGACtctctctcattgacctccatgcAAAAATTCCGTGGACAGATTTTGGGTCGAGTAaaccctctcgcttcgcctctttctctctggttgTAGTCGTTGTATGGCACTGTATTACATTGTATAGTCTGGCATCTAGTGGTTATAGTTGTGTACTGACAACTGCTACAGCAGGCATTCTAAAGAGAAATGACAACACAGATTCATGAAAATCTACTTTTATTTGGATGCAAAAACTCACAATTTAAAAGCAATACTGtagtagcagaggagagtaggCTGTTTGCTGGTTGGTTGGAGTATGTCTGATAGTTTCCCCAGTGAGCAAAACTGTTTGAGAAGACATATTTTCAACCAATTTTGTTCACTGGGTTGGCTATTTCAATTATCTTCTCCCTCACTATgatcaccagaataagacctgGCAGCACAGACAACAAGCACTCAAAATGAGCGTGAGCAATGAGCGTTATCAGGAAAGGATTTCATAGTTGAATTCCAACTTCTCCAAGTTCCTAGCGGTTCCACTTCAGCTCTTTTTCCATCTGCAAAACTCAACATGTCACGGCCGTTTCAATCAGAGGATGAAATGCTCATTTTTACTTTGTGAGATGCCCATTTAAAACAAACCAGTGACATTGTCTCCTGCTGGGTGTTCGCTGTAATGGACCAGTTGCATTCAATCAAGATGAGAGTCGTTAGAGGTTTCTTCCATACAACTCTTAATCCCATTGTTTTAGCTGTCCTACGCGTAGTTGATATTTCTCATGTCGATGTGAGGTCAGTCTGGCCTGGAGTTCACAGGCCACAATGCAATCAATTACGCGCCAAGGGGAAACCATGCAGTCGGTCAATGTTAAGTATCGGAGGTGTCAACCACATTCAAATCCTGGCCCGGAAGCTGTTCGTCATTGGCATAAACATTTAGAGTGAACCCATAGTGTGGTTTTCCTTTATATGCGATTGAATTCAAATGAAACCACAGATGGGGAATGTGTGAGGACTGTGTAAAAACTGGGTCTGGGGTAAAACTCGAAAAGAAAACGAGATAAAAAACCTCAAGGACACACAAAGCAAAGCATATTGAAGCAAAGCCTAGAGGCATCAAAGTCATACTGAAGACAAAACAATCAATGGTTTTTTGTTGTAAGGTAACTTGGGTAGTTGTCACATTTGTTTCTGTCAAATCTTGCGATATAAACCAATGGTTTGACCACAGTATGAGCTACATTCCATTGTGGTGTAAATGGAAAATATACACAAGGCATCTACTCGAAAGGATTGTATAAAAAACGGTTCTAAAAATATCTCTGGTTGGTTTCACAAAAGCAAACTGTATCAAAAGCATTGGCAGAGAGCAAGCAAGATAAATCGGAGAACCCTTATTACAACAGAAAGCTGGACAACCAATCACTTTCGCTTTGATTACGGACGTATGAGAGTCCCATACAGCACATGCAATCCATTTAagtcaacacagtcaaaacacgACACAGAGAAATGAACATTTTACAGCTGAACATCAGAGAGACAACCATAGTTGGTCTATTGTGCTTTATACGGAGTAGGCTTGGCCTGTCTATACAACAATCATGGGCTGCTAACGTCACGCACGTGTTCAGGGTACTGTTGTCAGCAGAGGTTATCATCATCCCAACCCCACAGAGAGGGCGCTGATGGGCAGGGTCAGGAGGGTCAGGTTTACCCATCATCATTAACACCTGGATCCTTTGTTAAGAGGGGAATAATAACGTTTAAAGGAAAGCTAAACCATTAAAGTCCAGTTTAGAGGTTTTGTTTCTTCTTGCAAACTTTTTACATTTGTACCCTTTTGCACTTTCATGTTGAtcttctagcctggtcccagatctgttttttttgttgttgcttttgcAGACTATATTTGAATTGACAAAACATGACAATACCATAAGGAGTTTGGCAAGCGAGccgaaacagactggcacccaggctatttGACTTCCGTGAGGGGAAAAAGTAACAGGTGCACGTTTCACTAGTAGATCTGCACCTCCGTCTCTGGATTCCTATGCTACTGTATGTGCCAGTCATTACTTCTCATGTGTGAACTCAGAAGTTGAgacatgcccccccccccccaagtctcAGTGGTCACCTGACAACGCTGGTGAAAGTCTATGAGGCTATGATGTCTGATGAATTACCATGGAGATcatgatgactgactgactgactgcacatACGCACGGTACTGTAATACTGAAGAGACTGCACACAATGCCTAGTTACCCAACGGTTACATTcctctgtgtttccatagagatcTATGGCACATGCCTCAGTCAGTGGTAATGAACACGGAGCACCATGAAACCTGAAGATGAGGTGGCTCCTGAGAAGCACCAGGAGTTTCGAAAGGCCTGCTGTACTGTGTTTATTTGAAGAGGCCAAGTGAGCACAAGACTTTGAACATTGACATTTTTCTACGTCTTTTGCTCGTATGGAGATGGTTTTGTTGTAACAGGAGAGAAAAGCTAGTTGGCGGTTTACGTTTCAGACGAACTGGTGGTCCCTCACTGTGAGACTGTTTTACAACACCGTGAATATAGGCTGGACTTTCTCTTATCTGGAGAAGTCTGAATAATCTAACATGGCACTTGACGGGACATATCTTATCAAATATCCTACTGGACAGACCTCTGCCAAGTGTGACAACAAATGTCTGCGTTAGAAGTGGGGCCAGACAGACATGTAGTCATTGCTACTCTTAGAGCATGGTCTGCAAATCAAATCAGTCAAATTCTTGCCGAATTAAGGAATTTACGTCAGGATTGGGCTTCTCGTACGTGGGCCTCTGAAATGGAAGGGGGCTGGATGAGGCTGACATAGTCTGTTATTGTTTTTGTGGTTGTGTGTGCTAAAGGGTGACATTGAGAtgggtgtacagtacagtaggtaccgtgtacagtactgtaggtaccgtgtacagtactgtaggtacCGTGTACAGTAGCTATCAGTGTACAATAcagtaggtacagtacagtaggtacagtacagtaggtacagtaggtacaGTGTACAATAGAGTAGGTACAATGTACAATAGAGTatgtacagtgtacagtacagtaggtactgtaggtacagTGCACAGTACAGTAGGCAccgtgtacagtacagtaggtacagtgtacagtacagtgtacagtacagtaggtacATTGTACAATACAGTAGGCACAGTGTACAATACAGTAGgtacagtgtacagtacagtaggtacagtgtacagtacagtaggtacagtacagtggtgtgtCTCTACTCCTCTACAATGTGGGACAGCTGCTTCTCGTAGAGGCTGAGGACGTGGTGAACAAACTGGTACTGCTCACCCGTCTGGATCATCCCgcctctgccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186488 lncRNA upstream 21525 57903837 ~ 57973779 (+) True G163499
TU186451 lncRNA upstream 149867 57845123 ~ 57845437 (+) True G163464
TU186415 lncRNA upstream 200442 57794549 ~ 57794862 (+) True G163438
TU186330 lncRNA upstream 202890 57789707 ~ 57792414 (+) True G163362
TU186279 lncRNA upstream 330863 57661952 ~ 57664441 (+) False G163352
TU186619 lncRNA downstream 117298 58116793 ~ 58176299 (+) True G163591
TU186701 lncRNA downstream 217496 58216991 ~ 58223485 (+) False G163662
TU186702 lncRNA downstream 217851 58217346 ~ 58223485 (+) True G163662
TU187400 lncRNA downstream 496697 58496192 ~ 58497512 (+) True G164289
TU187416 lncRNA downstream 504553 58504048 ~ 58504313 (+) True G164304
XM_021566934.2 mRNA upstream 197670 57795263 ~ 57797634 (+) True LOC110492531
XM_021566881.2 mRNA upstream 205909 57667228 ~ 57789395 (+) False LOC110492500
XR_005037372.1 mRNA downstream 40843 58040338 ~ 58106864 (+) False LOC110492579
XM_021566992.2 mRNA downstream 40843 58040338 ~ 58109443 (+) False LOC110492579
XM_021567000.2 mRNA downstream 40843 58040338 ~ 58109443 (+) False LOC110492579
XM_021567008.2 mRNA downstream 40843 58040338 ~ 58109443 (+) False LOC110492579
XM_021567023.2 mRNA downstream 40843 58040338 ~ 58109443 (+) True LOC110492579
TU186506 other upstream 63313 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 941662 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1742706 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 2048059 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 3266444 54728296 ~ 54728860 (+) True G159889
TU186698 other downstream 216182 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 1946213 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2516137 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 2851937 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 2851937 60851432 ~ 60866455 (+) True LOC110493059

Expression Profile