RNA id: TU187105


Basic Information

Item Value
RNA id TU187105
length 1836
RNA type TUCP
GC content 0.46
exon number 2
gene id G164003
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58111341 ~ 58118221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCATAGTGTCTAAATGCAAGATAACCTCTACGGTCTACTGCAATGATACTTTCATCCCTCAGATCTCCTTCCGCTATTTCACGTTTTATACAGATGAGTCCGGTCTCTATAAATCTGTTCTCTTTCGAGTACTTGTTTTCCCGATGTATCACACGTGGGGATTCGCTGGAGGTGGATCCCGACGAAGAACCAATCACACAACGTCTGTCGGACACAGGTGTGAGCCCTCCTTCACAAGGCGCAACTCGCTGGCCACCGGTCAATCTGGTGTCTGAAGGATGCCGACGAGACGCCCGGTGTAAGAacgagaagaagaaagagaggggagaggaaatgcGGAGAAGATGGCGGAAACTGAGGTTTTGTTTGAAACTGCTAGTGAGTCGGGAGAAGCTAATAGCACAGAAAGTGAGAATGAGTGGGTGACTGTGGCGAAGAAGATGAGAAGCAAGAGATGTAAAATAGGAAATGCCTAGACTAGTTTTTTGTCCGATTGAGGGTTTTAGGTCACCGCTACTTGGGAAATCCATGTAACGTCTCGAGGAAAATCTGGAATGTGTGAGAGGAACGTGTGGCGTTGGTGAGAGTCACAGGGAGTGGTTGTATTTCGATTTTCTTTGTGTGCCCACGGAACGTGTTTTAAGACTAAAACAGATAGTGGATTTTTGGTAGCAGGGCGCCTACCAAGGGGGTTATTTCTGCGGTGGAgcaagaaagaaataaaagcagagGATATTACCGACGACATCGATGGAGTGGTTGGTGCCCGTCGACTGACCTGTACGGTGGACGGAGAAAAGACATTCACTTCCTCCAGGCTActgttCTTTGATGAGGAGTCTCTCCCTTCTCATATAAAGTTAGGATTAATGAGATACCTTGTTGTGTCATAAATGTAAACGATTTGGTCACGTGTCAGGTGTGTGCAGAAGGGAAGAGTACCGTATGCCAGGTGAAGTGAAATGCGGCAACTGTGGAGGTGAACATGAGCCCCCGGATTCCTGGAATGCCCCGTTAGGGTGAGGGAGAATGAGGTGTCCAGAGTAAGGAGCGTCCAGCGTGTGCCTCAtcatgttcatgtttttttttttcctgaCTCCATTTCTGCCTCTGTTTTTCCCTGCCTCCCTTTGGATAGTGGAGGCTTTTATATTTACTGATAATAGCAAGTGGCTTTACAGCCCACTGAGGGCCCAGAGAGAGGTATTGGCTACCTCTTGGGAACTCTTCACAGACATCTCATTTTGTAGGAGATTTGCAATGCGACATGTCGGGCCGCCCCTCATATGTTTATGAGGTTTTACTGAATGGAATCGCTGCACCTTCGTTAGCGCATTCTATCCTCAGTGTCGGAGCCTCTGCGGGGTAATGCAGTTGGGATTACCCTGGGTTCTGGGAGAGCCTATCTGAGATATGGGAGTTGGCAAAGATTCCCCACATGTGATACGTCAACATCAGTATTTGAAAGAGAACTTAAGGTTACTTTTGTAACCACGGGTTCTCTGATAATGAGTGAGACATATCACCGCATTTCTCTGCTCGCGAGGAATCGAGGCATGCTTGAGATTGACCAGAGGGCGGGGGCGAGTGGCGCCTTATAAGGAGGGAGGGCTCATCTCATTCGCCACTTGACCTGTCTGCCTCCTGTGATTAGTTCTTCATAGTGAACCGCCTTCAGCGAATCCCCATATGTGATACGTCTCACTCATATAATCAGAGAACCGGGGTAACGAAAGTGACCTTTAAGATATTGTTTCACAGACACTGGAATCATTATtgtaaaatgcatttttttgtgtgtgtgaaaagaCACTGGAAATTAGACTTTAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187046 lncRNA downstream 89865 58021094 ~ 58021476 (-) True G163944
TU186888 lncRNA downstream 316362 57794615 ~ 57794979 (-) True G163819
TU186912 lncRNA downstream 346218 57761150 ~ 57765123 (-) False G163837
TU186913 lncRNA downstream 349736 57761150 ~ 57761605 (-) True G163837
TU186894 lncRNA downstream 351012 57750249 ~ 57760329 (-) False G163825
TU187187 lncRNA upstream 139799 58258020 ~ 58259366 (-) True G164080
TU187211 lncRNA upstream 237185 58355406 ~ 58360739 (-) False LOC110492691
TU187306 lncRNA upstream 314584 58432805 ~ 58433005 (-) True G164195
TU187346 lncRNA upstream 341056 58459277 ~ 58459589 (-) True G164235
TU187368 lncRNA upstream 352107 58470328 ~ 58470584 (-) True G164257
XM_036951749.1 mRNA downstream 85343 57998305 ~ 58025998 (-) True LOC110492572
XM_036951756.1 mRNA downstream 85789 57998305 ~ 58025552 (-) False LOC110492572
XM_036951707.1 mRNA downstream 116652 57928123 ~ 57994689 (-) False dusp8a
XM_036951727.1 mRNA downstream 116652 57928123 ~ 57994689 (-) True dusp8a
XM_036951716.1 mRNA downstream 117286 57928123 ~ 57994055 (-) False dusp8a
XM_036951766.1 mRNA upstream 766 58118987 ~ 58200644 (-) False LOC110492612
XR_005037374.1 mRNA upstream 68062 58186283 ~ 58194922 (-) True LOC110492624
XM_021567063.2 mRNA upstream 90275 58208496 ~ 58235395 (-) False LOC110492633
XM_036951841.1 mRNA upstream 92690 58210911 ~ 58248173 (-) True LOC110492633
XM_036951890.1 mRNA upstream 239567 58357788 ~ 58389297 (-) False LOC110492691
TU186917 other downstream 321958 57776469 ~ 57789383 (-) True G163839
TU186219 other downstream 511123 57595537 ~ 57600218 (-) False LOC110492469
TU186222 other downstream 511123 57595537 ~ 57600218 (-) False LOC110492469
TU186224 other downstream 511123 57595537 ~ 57600218 (-) True LOC110492469
TU186027 other downstream 777439 57333078 ~ 57333902 (-) True c2h11orf16
TU187106 other upstream 11188 58129409 ~ 58131373 (-) True LOC110492612
TU187140 other upstream 55438 58173659 ~ 58175088 (-) True G164037
TU187215 other upstream 244365 58362586 ~ 58363594 (-) True LOC110492691
TU188907 other upstream 1363736 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 1369240 59487461 ~ 59487840 (-) True G165746

Expression Profile