RNA id: TU188139


Basic Information

Item Value
RNA id TU188139
length 1415
lncRNA type intronic
GC content 0.40
exon number 2
gene id G164992
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58929776 ~ 58933587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGAGATTTCTCTCaacttaaaataaataattccaaGGTTTAAAAAGACATTCAAATATTTGTTAAGAAATTCTCAGCAATCTAAATCAGAGTGCATTTTTCATCAGCATGAAACAAATCATCATGTTGATACTGATCACACCCCCATTGGCCAGCATGGTAGAAACTAAAATTAATATATCTTGTCGGACAAATCCAGGTAGTGACTCCCGGTTTAAGTAACATATCTTCTTTTTTGTGCcgaatgaacatgacccagtacAAGCATCATGATCCCACTAAGTATAAGGCAACACACCTATGTCTATGTGCCATTGGCACAAACCTGCCATAGTtcctgattattattattacaaattGCAATTTGGTAATGGATATAAATCAAATAGATTAGGATCAGTTTAACTCTCAGGATCAGAGTTCATCCTCTCCATTCACCAGGGCATGCTGAAAATAGTATATATCTCTTTGGTACACAACTTCTTTCCACATGTCAGCATAACAACAATCAAAACAATCAATCCATAATACATTAATTGCTGCACTCAGATAGTTTTTAATATACAAAAAGTATATGTCAGTTTTAAAAATAATTAAGTTTCCAGAACATAATTAAAACCCAATTAATCATCCAACCAAAATGTTGAATGACATTGCTCAGGgattcacattgatTATATCACTCAAAATTAAAACCCTCAACTTAACACACATCAATACTGGTAGAATGTATTACATATATATTAACATACAATATAATTATCCTATAATTCCACTATTAACTTTCTCATCTCAATTATAAttacagatcagtatctcaatgcattcttagcCTAAATTACTATAAATCTAGCAGTGTGTAAAcctccacaatcaacctgataccccaGATAACAATTTTAGACAAGTGTAAATCAAATACAGGCACAGATGACCAACCCCTTCCTTCCCTGGCACTCAATCTTCTGACATCTCTTCATTTCTTCTTCAGATAGCTTCACAGTTCAAAGTGGATGGCCAATtataatgtcccaatttcaatgttTCAGGAATAATTTGATTTTCGCAAACAGACTAACGTCTCACTTGAGCCCCACCACAATGCCTATTATGTCTTGTTCATTTGCCAACCAGTATACCAGCAACATGAGAGAAGTTTTGGAACGGATCTCTCTTCATACTCACTCCACGTGGACTCCTGTTACATTCCTGAGTGAAAAGCATGATAGAAAAGGCAGTTGATAGCTTCAACTGGATGCTGTACACCGGTTGCTGGCTCGGACTCAGTTCTGTAGGTAGAAGTGGTGCAGGACAGGGTCGTATTGAATGTCATTTCTTCAGCCGGTTAGATGGGGTTTTGAGGTCCACAATGTGTGGTCAAATTATCCCTTCCATGAATCTGTAGTCATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188109 lncRNA downstream 46177 58878574 ~ 58883599 (-) True G164963
TU188070 lncRNA downstream 102919 58826434 ~ 58826857 (-) True G164928
TU187675 lncRNA downstream 283322 58575910 ~ 58646454 (-) True G164560
TU187667 lncRNA downstream 363396 58565730 ~ 58566380 (-) True G164552
TU187373 lncRNA downstream 453830 58475733 ~ 58475946 (-) True G164262
TU188174 lncRNA upstream 48429 58982016 ~ 58987113 (-) True G165026
TU188262 lncRNA upstream 148208 59081795 ~ 59082139 (-) True G165109
TU188293 lncRNA upstream 166954 59100541 ~ 59100836 (-) True G165140
TU188356 lncRNA upstream 214610 59148197 ~ 59148495 (-) True G165203
TU188367 lncRNA upstream 222057 59155644 ~ 59155870 (-) True G165214
XM_036951888.1 mRNA downstream 540475 58357788 ~ 58389301 (-) False LOC110492691
XM_036951890.1 mRNA downstream 540479 58357788 ~ 58389297 (-) False LOC110492691
XM_036951892.1 mRNA downstream 540479 58357788 ~ 58389297 (-) False LOC110492691
XM_036951841.1 mRNA downstream 681603 58210911 ~ 58248173 (-) True LOC110492633
XM_021567063.2 mRNA downstream 694381 58208496 ~ 58235395 (-) False LOC110492633
XM_021567205.2 mRNA upstream 410572 59344159 ~ 59356493 (-) False LOC110492741
XM_021567214.2 mRNA upstream 410572 59344159 ~ 59356494 (-) False LOC110492741
XM_036951921.1 mRNA upstream 410572 59344159 ~ 59356495 (-) True LOC110492741
XM_021567256.2 mRNA upstream 883138 59816725 ~ 59823875 (-) True LOC110492772
XM_021567266.2 mRNA upstream 893037 59826624 ~ 59841614 (-) False LOC110492782
TU187215 other downstream 566182 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 754688 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 798403 58129409 ~ 58131373 (-) True LOC110492612
TU187105 other downstream 811555 58111341 ~ 58118221 (-) True G164003
TU186917 other downstream 1140393 57776469 ~ 57789383 (-) True G163839
TU188907 other upstream 548370 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 553874 59487461 ~ 59487840 (-) True G165746
TU189225 other upstream 894489 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 986291 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 1468761 60402348 ~ 60406808 (-) True G166794

Expression Profile