RNA id: TU188356



Basic Information


Item Value
RNA id TU188356
length 299
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G165203
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59148197 ~ 59148495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctgacatttcaaattcctaaaacaaagtggtgaccctaactgacctaagacagggaatttttactagaattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttctgacttcaactgtaagtactcTGAAGTGTTACATTTCTAGCTCAAAACAGCTGTACAGTATTTCTTCATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU188293 lncRNA downstream 47361 59100541 ~ 59100836 (-) True G165140
TU188262 lncRNA downstream 66058 59081795 ~ 59082139 (-) True G165109
TU188174 lncRNA downstream 161084 58982016 ~ 58987113 (-) True G165026
TU188139 lncRNA downstream 214610 58929776 ~ 58933587 (-) True G164992
TU188109 lncRNA downstream 264598 58878574 ~ 58883599 (-) True G164963
TU188367 lncRNA upstream 7149 59155644 ~ 59155870 (-) True G165214
TU188372 lncRNA upstream 14142 59162637 ~ 59162857 (-) True G165219
TU188379 lncRNA upstream 19843 59168338 ~ 59168542 (-) True G165226
TU188398 lncRNA upstream 37122 59185617 ~ 59186069 (-) True G165245
TU188486 lncRNA upstream 103434 59251929 ~ 59252131 (-) True G165331
XM_036951888.1 mRNA downstream 758896 58357788 ~ 58389301 (-) False LOC110492691
XM_036951890.1 mRNA downstream 758900 58357788 ~ 58389297 (-) False LOC110492691
XM_036951892.1 mRNA downstream 758900 58357788 ~ 58389297 (-) False LOC110492691
XM_036951841.1 mRNA downstream 900024 58210911 ~ 58248173 (-) True LOC110492633
XM_021567063.2 mRNA downstream 912802 58208496 ~ 58235395 (-) False LOC110492633
XM_021567205.2 mRNA upstream 195664 59344159 ~ 59356493 (-) False LOC110492741
XM_021567214.2 mRNA upstream 195664 59344159 ~ 59356494 (-) False LOC110492741
XM_036951921.1 mRNA upstream 195664 59344159 ~ 59356495 (-) True LOC110492741
XM_021567256.2 mRNA upstream 668230 59816725 ~ 59823875 (-) True LOC110492772
XM_021567266.2 mRNA upstream 678129 59826624 ~ 59841614 (-) False LOC110492782
TU187215 other downstream 784603 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 973109 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 1016824 58129409 ~ 58131373 (-) True LOC110492612
TU187105 other downstream 1029976 58111341 ~ 58118221 (-) True G164003
TU186917 other downstream 1358814 57776469 ~ 57789383 (-) True G163839
TU188907 other upstream 333462 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 338966 59487461 ~ 59487840 (-) True G165746
TU189225 other upstream 679581 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 771383 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 1253853 60402348 ~ 60406808 (-) True G166794

Expression Profile