RNA id: TU188372


Basic Information

Item Value
RNA id TU188372
length 221
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G165219
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59162637 ~ 59162857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattatagaggtctaaacgccatcacagtggggtatagttacccactacctctcatcgctacggcggtggaatcatttcacggagcgcagttcttcacaaaactggatctcaggagcatGTATAGTcgggtgcgtattcggaagggagacgagtggaaaaccgcatttagtaccacatcgggccactatgagtacctcgtcatgccgcatgggttaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188367 lncRNA downstream 6767 59155644 ~ 59155870 (-) True G165214
TU188356 lncRNA downstream 14142 59148197 ~ 59148495 (-) True G165203
TU188293 lncRNA downstream 61801 59100541 ~ 59100836 (-) True G165140
TU188262 lncRNA downstream 80498 59081795 ~ 59082139 (-) True G165109
TU188174 lncRNA downstream 175524 58982016 ~ 58987113 (-) True G165026
TU188379 lncRNA upstream 5481 59168338 ~ 59168542 (-) True G165226
TU188398 lncRNA upstream 22760 59185617 ~ 59186069 (-) True G165245
TU188486 lncRNA upstream 89072 59251929 ~ 59252131 (-) True G165331
TU188542 lncRNA upstream 128144 59291001 ~ 59291390 (-) True G165386
TU188768 lncRNA upstream 132966 59295823 ~ 59296045 (-) True G165605
XM_036951888.1 mRNA downstream 773336 58357788 ~ 58389301 (-) False LOC110492691
XM_036951890.1 mRNA downstream 773340 58357788 ~ 58389297 (-) False LOC110492691
XM_036951892.1 mRNA downstream 773340 58357788 ~ 58389297 (-) False LOC110492691
XM_036951841.1 mRNA downstream 914464 58210911 ~ 58248173 (-) True LOC110492633
XM_021567063.2 mRNA downstream 927242 58208496 ~ 58235395 (-) False LOC110492633
XM_021567205.2 mRNA upstream 181302 59344159 ~ 59356493 (-) False LOC110492741
XM_021567214.2 mRNA upstream 181302 59344159 ~ 59356494 (-) False LOC110492741
XM_036951921.1 mRNA upstream 181302 59344159 ~ 59356495 (-) True LOC110492741
XM_021567256.2 mRNA upstream 653868 59816725 ~ 59823875 (-) True LOC110492772
XM_021567266.2 mRNA upstream 663767 59826624 ~ 59841614 (-) False LOC110492782
TU187215 other downstream 799043 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 987549 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 1031264 58129409 ~ 58131373 (-) True LOC110492612
TU187105 other downstream 1044416 58111341 ~ 58118221 (-) True G164003
TU186917 other downstream 1373254 57776469 ~ 57789383 (-) True G163839
TU188907 other upstream 319100 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 324604 59487461 ~ 59487840 (-) True G165746
TU189225 other upstream 665219 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 757021 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 1239491 60402348 ~ 60406808 (-) True G166794

Expression Profile