RNA id: TU188398


Basic Information

Item Value
RNA id TU188398
length 453
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G165245
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59185617 ~ 59186069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTGGTCAGGGtcatatgtctgtggaacttgttcagcttatgtctcagttgttgaatcttatgttcatacagatatttacacgttaagtttgctgaaaattaacacagttgacagtgggaGGTCATTTAGTTTTTGCTGTGTTTATATGCCGAGGGAATTCACAGGTGTTATTATGAGAgctgtgtacagtcgtggccaaaagttgtgaatgacacaaatatacagtacattttcaaaaagtctgctgcctcagtttgtatgatggcaatttgcatatactccagaaggTTATGAAGAGTGagcagatgaattgcaattaattgcaaagtccctctttgccatgcaaatgaactgaatccccccaaaacatttccactgcatttcagccctgccacaaaaggaccagctgacattatgtcagtgattctctcattaacacaggtgtgagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188379 lncRNA downstream 17075 59168338 ~ 59168542 (-) True G165226
TU188372 lncRNA downstream 22760 59162637 ~ 59162857 (-) True G165219
TU188367 lncRNA downstream 29747 59155644 ~ 59155870 (-) True G165214
TU188356 lncRNA downstream 37122 59148197 ~ 59148495 (-) True G165203
TU188293 lncRNA downstream 84781 59100541 ~ 59100836 (-) True G165140
TU188486 lncRNA upstream 65860 59251929 ~ 59252131 (-) True G165331
TU188542 lncRNA upstream 104932 59291001 ~ 59291390 (-) True G165386
TU188768 lncRNA upstream 109754 59295823 ~ 59296045 (-) True G165605
TU188772 lncRNA upstream 114009 59300078 ~ 59300387 (-) True G165609
TU188815 lncRNA upstream 177390 59363459 ~ 59365028 (-) True G165651
XM_036951888.1 mRNA downstream 796316 58357788 ~ 58389301 (-) False LOC110492691
XM_036951890.1 mRNA downstream 796320 58357788 ~ 58389297 (-) False LOC110492691
XM_036951892.1 mRNA downstream 796320 58357788 ~ 58389297 (-) False LOC110492691
XM_036951841.1 mRNA downstream 937444 58210911 ~ 58248173 (-) True LOC110492633
XM_021567063.2 mRNA downstream 950222 58208496 ~ 58235395 (-) False LOC110492633
XM_021567205.2 mRNA upstream 158090 59344159 ~ 59356493 (-) False LOC110492741
XM_021567214.2 mRNA upstream 158090 59344159 ~ 59356494 (-) False LOC110492741
XM_036951921.1 mRNA upstream 158090 59344159 ~ 59356495 (-) True LOC110492741
XM_021567256.2 mRNA upstream 630656 59816725 ~ 59823875 (-) True LOC110492772
XM_021567266.2 mRNA upstream 640555 59826624 ~ 59841614 (-) False LOC110492782
TU187215 other downstream 822023 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 1010529 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 1054244 58129409 ~ 58131373 (-) True LOC110492612
TU187105 other downstream 1067396 58111341 ~ 58118221 (-) True G164003
TU186917 other downstream 1396234 57776469 ~ 57789383 (-) True G163839
TU188907 other upstream 295888 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 301392 59487461 ~ 59487840 (-) True G165746
TU189225 other upstream 642007 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 733809 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 1216279 60402348 ~ 60406808 (-) True G166794

Expression Profile