RNA id: TU188542


Basic Information

Item Value
RNA id TU188542
length 390
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G165386
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59291001 ~ 59291390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgagacagcataggcataatttatcgttcagctttgtctcctaaactaagttattttctcaaactcagaaccataaaccaatcctccatatcaacaggcatatatcaaatccatcctatcttgacaagatcacagagacacactgactggcacacagacattgtggagccaagagatacacgcttgacctctcccctctctccggcccaagcaacttagtcttgacatagaacagatactgcaacccgccacagtattatacaaaaataacattctgatgagaagtaacttacaaacatatgatgaatataaaacatcttacctatgttaccaactaattctgattattccccaacacgagccattcccaacgatgcagagttgaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188486 lncRNA downstream 38870 59251929 ~ 59252131 (-) True G165331
TU188398 lncRNA downstream 104932 59185617 ~ 59186069 (-) True G165245
TU188379 lncRNA downstream 122459 59168338 ~ 59168542 (-) True G165226
TU188372 lncRNA downstream 128144 59162637 ~ 59162857 (-) True G165219
TU188367 lncRNA downstream 135131 59155644 ~ 59155870 (-) True G165214
TU188768 lncRNA upstream 4433 59295823 ~ 59296045 (-) True G165605
TU188772 lncRNA upstream 8688 59300078 ~ 59300387 (-) True G165609
TU188815 lncRNA upstream 72069 59363459 ~ 59365028 (-) True G165651
TU188877 lncRNA upstream 156680 59448070 ~ 59448337 (-) True G165712
TU188893 lncRNA upstream 173719 59465109 ~ 59465330 (-) True G165728
XM_036951888.1 mRNA downstream 901700 58357788 ~ 58389301 (-) False LOC110492691
XM_036951890.1 mRNA downstream 901704 58357788 ~ 58389297 (-) False LOC110492691
XM_036951892.1 mRNA downstream 901704 58357788 ~ 58389297 (-) False LOC110492691
XM_036951841.1 mRNA downstream 1042828 58210911 ~ 58248173 (-) True LOC110492633
XM_021567063.2 mRNA downstream 1055606 58208496 ~ 58235395 (-) False LOC110492633
XM_021567205.2 mRNA upstream 52769 59344159 ~ 59356493 (-) False LOC110492741
XM_021567214.2 mRNA upstream 52769 59344159 ~ 59356494 (-) False LOC110492741
XM_036951921.1 mRNA upstream 52769 59344159 ~ 59356495 (-) True LOC110492741
XM_021567256.2 mRNA upstream 525335 59816725 ~ 59823875 (-) True LOC110492772
XM_021567266.2 mRNA upstream 535234 59826624 ~ 59841614 (-) False LOC110492782
TU187215 other downstream 927407 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 1115913 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 1159628 58129409 ~ 58131373 (-) True LOC110492612
TU187105 other downstream 1172780 58111341 ~ 58118221 (-) True G164003
TU186917 other downstream 1501618 57776469 ~ 57789383 (-) True G163839
TU188907 other upstream 190567 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 196071 59487461 ~ 59487840 (-) True G165746
TU189225 other upstream 536686 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 628488 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 1110958 60402348 ~ 60406808 (-) True G166794

Expression Profile