RNA id: TU188565


Basic Information

Item Value
RNA id TU188565
length 1357
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G165409
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59316180 ~ 59381788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctcgtacttttccatttgatataggggagaaaccatgtgtccaagaacgatgtatcaatgaagagatatgtgaaaaacaccttgatgattgattctaaacaacgtttgccatgttttcagtcgatattatggagttaatttggaaaaaagtttgcgttttgaggactgaattttcggattttttttggtagccaaatgtgatgtataaaacggagctatttctaatacacaaagaatctttttggaaaaactgagcatctgctatctaactgagagtatcctcattgaaaacatcagaagttcttcaaaggtaaatgattttatttgaaggcttttatgttgaaatgttgcgtgctggatgctaacgtgctaaatgctaacgctaaatgctaatgctagctagctacttttacacaaatgattgttttcctatggttgagaagcatattttgaaaatctgagatgacagtgttgtttacaaaaggctaagcttgagagatggcatatttatttcatttcatttgcgattttcatgaatagttaacgttgtgttatgctaatgagcttgctgatagatttacacaatcctggatacaggggttttttcatagctaaacgtgacgcagaaaacggagcgatttgtccttaacaaataatctttcaggaaaaactgaacatttgctatctgagagtctcctcattgaaaacatctgaagttcttcaaaggtaaatgattttaattgaatgcttttctgtttttttgtgtaaatgttgccagctgaatgctaatgataaatgctacgctaaatgctacgttagccatcaatactgttacacaaatgcttgttttgcaatggttgagaagcatattttgaaaatctgagatgacagtgttgttaacaaaaggctaagcttgagagtgtcaggtgcgtgaatgaggacccaaaagcgaattaacaaaacagagtttctttaatgacgaaacacacgtaggctcagatggacaggcagattccgacaggacaggacaaggttagatgaacaggcagattccgacaggacaggacaaggttgcagcaaacacgacgatagtctggttcaggcatgagaaacacaaacgagaatccgacaaagacagaagcagaaacagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagttagagaagacaaggaacagctgggggaaagaggggaagaaaaggtaacctaatacgaccagcagagggagacagggtgaagagaaagaacaggaacaagacacaacatgacaatacatgacagtacccccccactcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188560 lncRNA upstream 5961 59310016 ~ 59310219 (+) True G165404
TU188553 lncRNA upstream 15484 59299739 ~ 59300696 (+) True G165397
TU188551 lncRNA upstream 17043 59298892 ~ 59299137 (+) True G165395
TU188544 lncRNA upstream 23090 59292729 ~ 59293090 (+) True G165388
TU188541 lncRNA upstream 24754 59291006 ~ 59291426 (+) True G165385
TU188625 lncRNA downstream 20673 59402461 ~ 59409982 (+) True LOC110492752
TU188655 lncRNA downstream 67761 59449549 ~ 59449785 (+) True G165496
TU188660 lncRNA downstream 72812 59454600 ~ 59454807 (+) True G165501
TU188670 lncRNA downstream 90109 59471897 ~ 59472121 (+) True G165510
TU188674 lncRNA downstream 101893 59483681 ~ 59483951 (+) True G165514
XM_021567187.2 mRNA upstream 282813 58797383 ~ 59033367 (+) False LOC110492721
XM_036951914.1 mRNA upstream 282814 58855670 ~ 59033366 (+) False LOC110492721
XM_021567141.2 mRNA upstream 993629 58316277 ~ 58322551 (+) True LOC110492681
XM_021567123.2 mRNA upstream 1019434 58253604 ~ 58296746 (+) False LOC110492647
XR_005034527.1 mRNA downstream 6162 59387950 ~ 59390103 (+) True LOC118937284
XM_021567226.2 mRNA downstream 20389 59402177 ~ 59643249 (+) False LOC110492752
XM_036951948.1 mRNA downstream 20389 59402177 ~ 59643249 (+) False LOC110492752
XR_005037383.1 mRNA downstream 90383 59472171 ~ 59477345 (+) True LOC118941102
XM_021567236.2 mRNA downstream 392375 59774163 ~ 59781857 (+) False LOC110492759
TU186698 other upstream 1099797 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 1384189 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 2262538 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 3063582 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 3368935 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 563920 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 1133844 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 1469644 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 1469644 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 1680805 61062593 ~ 61074591 (+) True G167288

Expression Profile