RNA id: TU188732


Basic Information

Item Value
RNA id TU188732
length 232
lncRNA type intronic
GC content 0.51
exon number 1
gene id G165569
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59591722 ~ 59591953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctagagacgtcaggtgtaacaaggataggagcggatgtaaaacgattcttgaggagatcaaaagctccctgggcggaaacggaccacttaaagcgcgtcttgacagaagtaagggctgtgagaggagctgccacctgaccgaaattacggatgaaacgacgatagaagttcgcgaagccgagaaagcgctgcagctcgacgcgtgacttagggacgggccaatcaatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188718 lncRNA upstream 35395 59556067 ~ 59556327 (+) True G165555
TU188684 lncRNA upstream 86214 59505266 ~ 59505508 (+) True G165524
TU188677 lncRNA upstream 103861 59487414 ~ 59487861 (+) True G165517
TU188676 lncRNA upstream 104525 59486870 ~ 59487197 (+) True G165516
TU188674 lncRNA upstream 107771 59483681 ~ 59483951 (+) True G165514
TU188733 lncRNA downstream 2062 59594015 ~ 59594290 (+) True G165570
TU188735 lncRNA downstream 4714 59596667 ~ 59597079 (+) True G165572
TU188743 lncRNA downstream 15452 59607405 ~ 59607633 (+) True G165580
TU188751 lncRNA downstream 25860 59617813 ~ 59618036 (+) True G165588
TU189128 lncRNA downstream 208105 59800058 ~ 59800342 (+) True G165946
XR_005037383.1 mRNA upstream 114377 59472171 ~ 59477345 (+) True LOC118941102
XR_005034527.1 mRNA upstream 201619 59387950 ~ 59390103 (+) True LOC118937284
XM_021567187.2 mRNA upstream 558355 58797383 ~ 59033367 (+) False LOC110492721
XM_036951914.1 mRNA upstream 558356 58855670 ~ 59033366 (+) False LOC110492721
XM_021567141.2 mRNA upstream 1269171 58316277 ~ 58322551 (+) True LOC110492681
XM_021567236.2 mRNA downstream 182210 59774163 ~ 59781857 (+) False LOC110492759
XM_021567244.2 mRNA downstream 182210 59774163 ~ 59781857 (+) True LOC110492759
XM_036952003.1 mRNA downstream 308177 59900130 ~ 59922723 (+) False LOC110501704
XM_036952009.1 mRNA downstream 308177 59900130 ~ 59922723 (+) False LOC110501704
XM_036952045.1 mRNA downstream 377753 59969706 ~ 59977321 (+) True iqub
TU186698 other upstream 1375339 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 1659731 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 2538080 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 3339124 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 3644477 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 353755 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 923679 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 1259479 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 1259479 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 1470640 61062593 ~ 61074591 (+) True G167288

Expression Profile