RNA id: TU188743


Basic Information

Item Value
RNA id TU188743
length 229
lncRNA type intronic
GC content 0.36
exon number 1
gene id G165580
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59607405 ~ 59607633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatgaaagaaatacaagctgaaataaacattctctccactattattccgacatgtcacattcttaaaataaagtggtgatcctaactgacctaatacagggaatttttactaggattaaatgtcaggaattgtgaaactgagtttaaatgtatttggctgaggtgtatgtaaacttctgacttcaactgtataagcgACTACCAGTTGTGCGCTCATTCTCTAAGTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188735 lncRNA upstream 10326 59596667 ~ 59597079 (+) True G165572
TU188733 lncRNA upstream 13115 59594015 ~ 59594290 (+) True G165570
TU188732 lncRNA upstream 15452 59591722 ~ 59591953 (+) True G165569
TU188718 lncRNA upstream 51078 59556067 ~ 59556327 (+) True G165555
TU188684 lncRNA upstream 101897 59505266 ~ 59505508 (+) True G165524
TU188751 lncRNA downstream 10180 59617813 ~ 59618036 (+) True G165588
TU189128 lncRNA downstream 192425 59800058 ~ 59800342 (+) True G165946
TU189149 lncRNA downstream 229193 59836826 ~ 59837031 (+) True G165967
TU189153 lncRNA downstream 233782 59841415 ~ 59841623 (+) True G165971
TU189156 lncRNA downstream 235436 59843069 ~ 59843273 (+) True G165974
XR_005037383.1 mRNA upstream 130060 59472171 ~ 59477345 (+) True LOC118941102
XR_005034527.1 mRNA upstream 217302 59387950 ~ 59390103 (+) True LOC118937284
XM_021567187.2 mRNA upstream 574038 58797383 ~ 59033367 (+) False LOC110492721
XM_036951914.1 mRNA upstream 574039 58855670 ~ 59033366 (+) False LOC110492721
XM_021567141.2 mRNA upstream 1284854 58316277 ~ 58322551 (+) True LOC110492681
XM_021567236.2 mRNA downstream 166530 59774163 ~ 59781857 (+) False LOC110492759
XM_021567244.2 mRNA downstream 166530 59774163 ~ 59781857 (+) True LOC110492759
XM_036952003.1 mRNA downstream 292497 59900130 ~ 59922723 (+) False LOC110501704
XM_036952009.1 mRNA downstream 292497 59900130 ~ 59922723 (+) False LOC110501704
XM_036952045.1 mRNA downstream 362073 59969706 ~ 59977321 (+) True iqub
TU186698 other upstream 1391022 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 1675414 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 2553763 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 3354807 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 3660160 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 338075 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 907999 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 1243799 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 1243799 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 1454960 61062593 ~ 61074591 (+) True G167288

Expression Profile