RNA id: TU189153


Basic Information

Item Value
RNA id TU189153
length 209
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G165971
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59841415 ~ 59841623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAGATTCAGTATGGCGACCATCACCATCAGCCAATCCAGGGGGAGGCACAGGGATTGTgcccctctccatctgtccgaCACTCTGGCATTCCTTTACTCTGTCTGACACACAATCCACCCACCACACTTATATACAGTGAAGgaagagagcgatggagagggagcaggagagggaaagcgagagttTCCTGTGACAGAGTAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189149 lncRNA upstream 4384 59836826 ~ 59837031 (+) True G165967
TU189128 lncRNA upstream 41073 59800058 ~ 59800342 (+) True G165946
TU188751 lncRNA upstream 223379 59617813 ~ 59618036 (+) True G165588
TU188743 lncRNA upstream 233782 59607405 ~ 59607633 (+) True G165580
TU188735 lncRNA upstream 244336 59596667 ~ 59597079 (+) True G165572
TU189156 lncRNA downstream 1446 59843069 ~ 59843273 (+) True G165974
TU189161 lncRNA downstream 9294 59850917 ~ 59851116 (+) True G165979
TU189163 lncRNA downstream 10298 59851921 ~ 59852129 (+) True G165981
TU189305 lncRNA downstream 26281 59867904 ~ 59868177 (+) True G166119
TU189306 lncRNA downstream 28373 59869996 ~ 59870470 (+) True G166120
XM_021567236.2 mRNA upstream 59558 59774163 ~ 59781857 (+) False LOC110492759
XM_021567244.2 mRNA upstream 59558 59774163 ~ 59781857 (+) True LOC110492759
XM_021567226.2 mRNA upstream 198166 59402177 ~ 59643249 (+) False LOC110492752
XM_036952003.1 mRNA downstream 58507 59900130 ~ 59922723 (+) False LOC110501704
XM_036952009.1 mRNA downstream 58507 59900130 ~ 59922723 (+) False LOC110501704
XM_036952045.1 mRNA downstream 128083 59969706 ~ 59977321 (+) True iqub
XM_036952033.1 mRNA downstream 144442 59986065 ~ 60251097 (+) False LOC110501720
XM_036952031.1 mRNA downstream 144446 59986069 ~ 60251097 (+) True LOC110501720
TU186698 other upstream 1625032 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 1909424 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 2787773 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 3588817 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 3894170 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 104085 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 674009 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 1009809 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 1009809 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 1220970 61062593 ~ 61074591 (+) True G167288

Expression Profile