RNA id: TU189306


Basic Information

Item Value
RNA id TU189306
length 475
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G166120
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59869996 ~ 59870470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccaaatctatgacgttaaaatgcctatttactctgttccatctaaCTGCGCATTCCACTGTCTCATCatcccagccaggcaatttataaacttgatctccactataaaaagcatcgaCATTCTTtaacatttcttttagactaacatttagttttcaacaacAGAGATTTTtatataaaccttgctgtctgtctgtctctccggcatttgcaacattgtttcaatattcaaattcgatctccagcggtccgatagtaatgaacgtgtctggagttgggacgagacagacaggcagtgattctcagccagtcgaaatcatcaaatcaaatcaaattgttttggtcacatacacataaactcagccaaaaaataaacgtccatttttcaggaccctgtctttcaaatataattCGTAAAGATTCAAATAACTTCAccgatcttcattgtaaagggtttaaacactgtttcccatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189305 lncRNA upstream 1819 59867904 ~ 59868177 (+) True G166119
TU189163 lncRNA upstream 17867 59851921 ~ 59852129 (+) True G165981
TU189161 lncRNA upstream 18880 59850917 ~ 59851116 (+) True G165979
TU189156 lncRNA upstream 26723 59843069 ~ 59843273 (+) True G165974
TU189153 lncRNA upstream 28373 59841415 ~ 59841623 (+) True G165971
TU189307 lncRNA downstream 340 59870810 ~ 59871098 (+) True G166121
TU189308 lncRNA downstream 1897 59872367 ~ 59872821 (+) True G166122
TU189333 lncRNA downstream 49658 59920128 ~ 59922883 (+) True LOC110501704
TU189453 lncRNA downstream 196835 60067305 ~ 60127600 (+) True G166259
TU189566 lncRNA downstream 391108 60261578 ~ 60261804 (+) True G166370
XM_021567236.2 mRNA upstream 88139 59774163 ~ 59781857 (+) False LOC110492759
XM_021567244.2 mRNA upstream 88139 59774163 ~ 59781857 (+) True LOC110492759
XM_021567226.2 mRNA upstream 226747 59402177 ~ 59643249 (+) False LOC110492752
XM_036952003.1 mRNA downstream 29660 59900130 ~ 59922723 (+) False LOC110501704
XM_036952009.1 mRNA downstream 29660 59900130 ~ 59922723 (+) False LOC110501704
XM_036952045.1 mRNA downstream 99236 59969706 ~ 59977321 (+) True iqub
XM_036952033.1 mRNA downstream 115595 59986065 ~ 60251097 (+) False LOC110501720
XM_036952031.1 mRNA downstream 115599 59986069 ~ 60251097 (+) True LOC110501720
TU186698 other upstream 1653613 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 1938005 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 2816354 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 3617398 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 3922751 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 75238 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 645162 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 980962 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 980962 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 1192123 61062593 ~ 61074591 (+) True G167288

Expression Profile