RNA id: TU190113


Basic Information

Item Value
RNA id TU190113
length 249
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G166855
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60492198 ~ 60492446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcatactggaccctattccaactaaactactgaaagagctgcttcctgtgcttggccctcctatgttgaacataataaacggctctctatccaccggatgtgtaccaaactcactaaaagtggcagtaataaagcctcttgaaaaagccaaaccttgacccagaaaatataaaaaactatcggcctatatcgaatcttccattcctctcaaaaattttagaaaaggctgttgcgcaacaactcactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190112 lncRNA downstream 1987 60489887 ~ 60490211 (-) True G166854
TU190109 lncRNA downstream 4003 60487981 ~ 60488195 (-) True G166851
TU190094 lncRNA downstream 25368 60466606 ~ 60466830 (-) True G166836
TU190093 lncRNA downstream 25659 60466151 ~ 60466539 (-) True G166835
TU190089 lncRNA downstream 28186 60462390 ~ 60464012 (-) True G166831
TU190118 lncRNA upstream 7542 60499988 ~ 60500200 (-) True G166860
TU190140 lncRNA upstream 25092 60517538 ~ 60517738 (-) True G166882
TU190147 lncRNA upstream 31262 60523708 ~ 60523914 (-) True G166889
TU190176 lncRNA upstream 46208 60538654 ~ 60539253 (-) False LOC110492890
TU190190 lncRNA upstream 62050 60554496 ~ 60554712 (-) True G166931
XM_021567353.2 mRNA downstream 21640 60448878 ~ 60470558 (-) True ppp1r3ab
XM_021567342.2 mRNA downstream 36912 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567347.2 mRNA downstream 36912 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567334.2 mRNA downstream 54638 60420501 ~ 60437560 (-) False LOC110492857
XM_036952111.1 mRNA downstream 119556 60293012 ~ 60372642 (-) True ptprz1a
XM_021567361.2 mRNA upstream 45173 60537619 ~ 60559746 (-) False LOC110492890
XM_021567373.2 mRNA upstream 132696 60625142 ~ 60627473 (-) True LOC110492911
XM_021567382.2 mRNA upstream 342711 60835157 ~ 60850501 (-) False LOC110493006
XM_021567381.2 mRNA upstream 342711 60835157 ~ 60850563 (-) True LOC110493006
XM_021567392.2 mRNA upstream 388950 60881396 ~ 60883242 (-) True LOC110493125
TU190051 other downstream 85390 60402348 ~ 60406808 (-) True G166794
TU189774 other downstream 571868 59919878 ~ 59920330 (-) True G166541
TU189225 other downstream 662183 59828076 ~ 59830015 (-) True LOC110492782
TU188911 other downstream 1004358 59487461 ~ 59487840 (-) True G165746
TU188907 other downstream 1009884 59481957 ~ 59482314 (-) True G165742
TU190135 other upstream 22780 60515226 ~ 60515522 (-) True G166877
TU190177 other upstream 47743 60540189 ~ 60549179 (-) True LOC110492890
TU191049 other upstream 186277 60678723 ~ 60679041 (-) True G167723
TU191030 other upstream 243525 60735971 ~ 60740351 (-) True G167706
TU191197 other upstream 482316 60974762 ~ 60975021 (-) True G167866

Expression Profile