RNA id: TU190274


Basic Information

Item Value
RNA id TU190274
length 231
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G167014
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60611285 ~ 60611515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtggttaaagatgccaccattggactctggagcagtggcaaCGTGTTCTcctgagtgatgaatcacacttcgcCATCTGGCGgtctgatggacgaatctgggtttggcggatgccaggagaacgctacctgcccgattGCATAGTGgccactgtaaagtttggtggatgaggaataatggtctggggctgtttttcatggttcgggctaggccccttagttccagtgaag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190273 lncRNA downstream 86 60610965 ~ 60611199 (-) True G167013
TU190268 lncRNA downstream 4087 60606976 ~ 60607198 (-) True G167008
TU190266 lncRNA downstream 4613 60606271 ~ 60606672 (-) True G167006
TU190239 lncRNA downstream 23238 60587823 ~ 60588047 (-) True G166980
TU190211 lncRNA downstream 42098 60568982 ~ 60569187 (-) True G166952
TU191035 lncRNA upstream 53440 60664955 ~ 60667126 (-) True G167709
TU191045 lncRNA upstream 59643 60671158 ~ 60671459 (-) True G167719
TU191031 lncRNA upstream 83748 60695263 ~ 60740351 (-) False G167706
TU191172 lncRNA upstream 318137 60929652 ~ 60929867 (-) True G167842
TU191174 lncRNA upstream 323957 60935472 ~ 60935735 (-) True G167844
XM_021567361.2 mRNA downstream 51539 60537619 ~ 60559746 (-) False LOC110492890
XM_021567353.2 mRNA downstream 140727 60448878 ~ 60470558 (-) True ppp1r3ab
XM_021567342.2 mRNA downstream 155999 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567347.2 mRNA downstream 155999 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567334.2 mRNA downstream 173725 60420501 ~ 60437560 (-) False LOC110492857
XM_021567373.2 mRNA upstream 13627 60625142 ~ 60627473 (-) True LOC110492911
XM_021567382.2 mRNA upstream 223642 60835157 ~ 60850501 (-) False LOC110493006
XM_021567381.2 mRNA upstream 223642 60835157 ~ 60850563 (-) True LOC110493006
XM_021567392.2 mRNA upstream 269881 60881396 ~ 60883242 (-) True LOC110493125
XM_021567393.2 mRNA upstream 277278 60888793 ~ 60899520 (-) True zgc:172145
TU190177 other downstream 62106 60540189 ~ 60549179 (-) True LOC110492890
TU190135 other downstream 95763 60515226 ~ 60515522 (-) True G166877
TU190051 other downstream 204477 60402348 ~ 60406808 (-) True G166794
TU189774 other downstream 690955 59919878 ~ 59920330 (-) True G166541
TU189225 other downstream 781270 59828076 ~ 59830015 (-) True LOC110492782
TU191049 other upstream 67208 60678723 ~ 60679041 (-) True G167723
TU191030 other upstream 124456 60735971 ~ 60740351 (-) True G167706
TU191197 other upstream 363247 60974762 ~ 60975021 (-) True G167866
TU191365 other upstream 642997 61254512 ~ 61256015 (-) True G168021
TU191382 other upstream 679624 61291139 ~ 61300092 (-) True LOC110493186

Expression Profile