RNA id: TU190323


Basic Information

Item Value
RNA id TU190323
length 202
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G167059
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60669512 ~ 60669713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtaggtgtccgctttgacttcctttgtgtctgaaaaaaagttgctttcagaacaattatttttgattgaaaataaaaaaggttTTGCTCTCGACAAAAAGACACAAATGTACCTCCATAGCATATAACAATTTGCCTGTGAATAACCACACCTTCATACAAACATGCTACTGTATGCAGAATTCTTGACGCACAACCGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190285 lncRNA upstream 51460 60617769 ~ 60618052 (+) True G167025
TU190250 lncRNA upstream 63650 60605591 ~ 60605862 (+) True G166991
TU190166 lncRNA upstream 119955 60549349 ~ 60549557 (+) True G166907
TU190159 lncRNA upstream 131034 60537821 ~ 60538478 (+) True G166900
TU190158 lncRNA upstream 131995 60537221 ~ 60537517 (+) True G166899
TU190416 lncRNA downstream 130734 60800447 ~ 60829029 (+) True G167137
TU190434 lncRNA downstream 171948 60841661 ~ 60891125 (+) True G167154
TU190444 lncRNA downstream 186879 60856592 ~ 60907513 (+) True G167164
TU190479 lncRNA downstream 251403 60921116 ~ 60921322 (+) True G167198
TU190485 lncRNA downstream 266540 60936253 ~ 60936489 (+) True G167204
XM_021567377.2 mRNA upstream 2911 60654601 ~ 60666601 (+) True LOC110492948
XM_036934029.1 mRNA upstream 29996 60627938 ~ 60639516 (+) True syt8
XM_021567324.2 mRNA upstream 262692 60398876 ~ 60406820 (+) True LOC110492846
LOC110501735 mRNA upstream 381888 60274384 ~ 60287624 (+) False LOC110501735
XM_021567308.2 mRNA upstream 402120 60262699 ~ 60267392 (+) True LOC110492825
XM_021567375.2 mRNA downstream 13267 60682980 ~ 60695886 (+) False LOC110492922
XM_021567376.2 mRNA downstream 13305 60683018 ~ 60695886 (+) True LOC110492922
XM_021567378.2 mRNA downstream 27666 60697379 ~ 60712198 (+) True LOC110492964
XR_005037406.1 mRNA downstream 44940 60714653 ~ 60719958 (+) True LOC118941118
XM_021617522.2 mRNA downstream 55877 60725590 ~ 60734031 (+) False LOC100170211
TU190136 other upstream 153632 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 716347 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2453129 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 2737521 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 3615870 57048314 ~ 57053642 (+) True G162130
TU190389 other downstream 181719 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 181719 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 392880 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 562483 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 861876 61531589 ~ 61532327 (+) True LOC110510683

Expression Profile