RNA id: TU191030


Basic Information

Item Value
RNA id TU191030
length 4064
RNA type TUCP
GC content 0.42
exon number 3
gene id G167706
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60695263 ~ 60740351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttttttattgttttatttggcggagagagcgagacagagagagaaagagatccaaAACCATAGTGTCGAATAGttgaacagctacagtataaaaaaaataacagcATTTCGGATCAAAGATCCTCTTCCTGCAGGGATTCCTAACAACAAGGTCATATAAATCCATCTCTGTACCACAATACGACAAAAGACAGCTGTGTTTAACCCTGAAACTTCTTCATCCTGCCGTCCATGCCAGCCTGTTCATCAACGTTCTTGCGCCAGTCACCAACTGCATCCGCTGCCTGCATGACAGAAAGTTTGTGATAGATGATATGTCAAAGACCTTTCATATAAAAAAAGGTTTTAGTCATTTaggagatgctcttatccagagtgacttactgtAATGAGTGCATAGATTTATAcgggtcccctgtgggaatcaaacccacaaccctggtgttgcaagtaccatgctctaccaactgagccacattgGACAATCAAAGCTCAGTACAGATTTGGTACACAGTACTTTCTGCTTTGCAGGTTTCCACACAAATACCCACCTCCTCTTTGACCTCCTTCTTCACTTCTTTCAAGTTGGCTCTGAAATCCATGGAAGCCTTGTGCTTGGTGCCCAGCAGAGCCTGGAGCATAGCATCAGCAGACATACGCACTTTCTTCAGGGCTGGCTTCTTCATGCCCTGGATCTCAATCACTTTCATCTTCAAGTCCTCAATTACCTCTTTGTCAGCCTTCAACACTTTTGCTTCTGCATCATATCTGTCCTCATCAATCTTGTCAATGGTATGGGCCATCTTTTTGAGCATCCATCAGCGTCGCTTGATCTCCAGACAAATCCAGGCCAGGGATCTCAGCCATGAAATTTTTTTTCACCTGCTCAGCCTCCTTTTTCTCGACTTCAATCAGCTCAAATGCTATCTGGAGCACCAAGCTCTGGAGAACAAAGAAACACAGTATGGCCAAACCCAGTCTACAACATAGTATTGGTGAACAAAATGTGACTTAAAGTGGAAAACTTTGATTGCTACATAAATGTTTGGACTTTAAATCAATAATATATACCAATTGGGCCTATTACAAtacattttggccactagattaTCTCCAGTGTGTCTCTTGTTAAACCATCAATATGCACTGAATTCACCCATGCAGCTGATTTCAACTGCAACAACATTGGCAACTGATTTACCACTCCGTAACTCAGATGTTAGGATAAATTTTTAGCACAGATtttccattatattgaccagatagGGTCTAGTGGCTgctctaacaatgaaaataaatgttttcatgGAAGGGAGTTGGGAGGAGGCACGATCAGGTGGgaacattctagccaatgagtgGCAGAAAcatgtgtgaacaacaggcacaacggATTCCAGACAGGTTAttcctctcgcttcgcctcttcttCTGGGCTTTTAGTCCTTATTGCAACCAACATTTTTCAAGAAAATGTTGCCCTCTGGTGAGTATTATCATCGGAACAATTTGATCCGGCAATTTTACCTAAGCCGGTTTATCTATATAGCAATTCTGTATTACTGAACTAAAGTATTTCATTGTTTTATTTACCATGGCAAATCTACTATGGCAATATATCATATATCATTCATACATTGTATGAATGGAAAAATCATGTGTGtgaatatttttttcagtttctGATGTACAGGTATGTATGTAATTCACTAATGATTTTACTTGTCTGAATCTAATATGGACATTTCTTATCAAAAGTGGGAAATTAAATATTCCCGAACTGTAGGCTACACATTTGACATTTGAAACTAaattgtgttgtattttgaatccaattcaaaatatatatttttaaagttgCACAAATTACTGTATATTCCATTTATTTTAAGAAGGTGGTTAGGCTGGTATAAGAGTAGCCTAACATTTCCTATGTTTTATGGCTAGCTAAGATTATTTCTTTATTTGTAGAACAAGTGAATAACACTCAATAGGTGAACCTTTATATTTTCTTACAGGCCAAGAAGACCAGTAGTCCTACTGtggtataaatgcctcatgaactTAGCTCAACTGTCATGCCCCATCAGAAGCCAAAGTATATGCTTGTTTACTCCATTATTTGAAAATAATGTTAACTGCAAACAAACATTGAATAGCCCCAAAAAATAGTCTAATTTTGATATCATTAATGGTCCTTGTacccatagctctgtctatgaatttgagagtggttacatttctccaggcccaaaCCACATTGTTTTATTTATGGAAAAACCACACGTTTTAGTAATTTCGTAGATGCTCTTAcctagagcaacttacagtaagtGCATAAATTGTTGTACTTTTCTTTTTTGTACCGGTCCCCCGTGGGATttaaacccacaaccctggagttgcaagcgccatgctctaccaactaagtAAGCCATGCTGGACCATCCcttagctttttaccaaaacagtggtgagGTGTTCACTGTGTTATTGTTTGAAGTGCAGATTTCTTCTTTAAAGCATTAAagaggggcctcccgagtggggaagtggtctaaggcactgcatcgcggtgctagctgtgccactagagagggagacccatggggtggggcacaattggcccagcatcatccgggataggggagggcttggccagcagggatgctcttgtcccatcgcacactagcgactcctgtggcaggccgggtgcaatgcacgctgacatggtcgccacgtgtacggtgtttcctccgacacattggtgcggctggtttcccgggttaagcgggcattgtgtcaagaagcagtgcggcttggctgggttgtgtttcggaggacggctctcgaccttcacttCCCCCGTACGGGAGTTACatcgatgggacaagactgtaactaccaattggataccaaacaggggtaaaaaaaaaaattatataaagtATTAAAGAGGTGAAAAGTTTTTAAACCAGTCGTGTGAAAGCCAAACTAATCTACTCAAGTGCTGGGTATTGGTGTGCCTGTGATGATTCTTTCAGACAATGGACCACAATTCATTGTATTCGTTTACCTTCAGATGATGCCTGCGACTCGACGTCATCTTTTTTCTATGAAGAAAGGTGGATTTGACATGTTGTTAGGGATAGAAGCGGCATTTGCATTACTGAGAGAATTTATGGCTGGATCAGACATGTTTTGTGTCAGGCTGAAAGTCTGGAATGCAACTTTTAGTGAATAAAAACAAATGTGCCAAGACTTACTCTGACATCTTGGCTGTTGTTGTGCTTCACACCCTGAGTAGAAGAAAGAAGACAGAAGACTTGTTTTAATATTTATGATAAAAACCTTTCTATAATATCATTAGGGTGCAGTAAGTTCAAAAGCGAGAGACAAGTCTGGTCTAAAGATCACGCTGTGATATTTAGCTGAAGATTGATAGGGTTTCACACGCTAACAACCATCAACCATTAAAAAAGTCAGAGATGACACCTGACTCTATCGGTCCAGTTTTAGCTCGCTCATAATCGCTCCAGACTCTAGCTCTGAAAAGGGATAATGTTTCCCCTAAGAACCTAGTTTGGCCAAGTGTTCCCCGACAGACTTTAACTGCTGCTGCTCTCGATTTATCAACCTGCCGCGGTGGCATGTATCAGAAAAGCCTTCCTAATCACATAAATCAACAGCATCTTCTTCATTCTGCAGACAGATGTGTTGGTGTTGAATGAAGATAGTCACACTTAATCAACTAATATATTGGTTTTGCTATTTTCCCTCCCCACGATTACAGCAAGTCTCAGTTAAAAGTTAATTCAAACATTTTCAAAACTCAAAAAAGGTTTTGATGTGGAGATGAGCCCTCATCCAATTCCATTGGTTGTCTGGATACAGCTACATGACTGAGCTCTAAGTTAATTAGAGAGATAGGCAATGTTTAAAGGGATTTTACTAATTAATTAGACCATGTTTCTGAACTGAGAACATCTGACACTTTACTttcccattcattcattcattcattcattcattcattcataatctaatctaatcaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191045 lncRNA downstream 64512 60671158 ~ 60671459 (-) True G167719
TU191035 lncRNA downstream 68845 60664955 ~ 60667126 (-) True G167709
TU190274 lncRNA downstream 124456 60611285 ~ 60611515 (-) True G167014
TU190273 lncRNA downstream 124772 60610965 ~ 60611199 (-) True G167013
TU190268 lncRNA downstream 128773 60606976 ~ 60607198 (-) True G167008
TU191172 lncRNA upstream 189301 60929652 ~ 60929867 (-) True G167842
TU191174 lncRNA upstream 195121 60935472 ~ 60935735 (-) True G167844
TU191175 lncRNA upstream 196623 60936974 ~ 60937229 (-) True G167845
TU191258 lncRNA upstream 315493 61055844 ~ 61097591 (-) True G167922
TU191279 lncRNA upstream 379480 61119831 ~ 61123748 (-) True G167938
XM_021567373.2 mRNA downstream 108498 60625142 ~ 60627473 (-) True LOC110492911
XM_021567361.2 mRNA downstream 176225 60537619 ~ 60559746 (-) False LOC110492890
XM_021567353.2 mRNA downstream 265413 60448878 ~ 60470558 (-) True ppp1r3ab
XM_021567342.2 mRNA downstream 280685 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567382.2 mRNA upstream 94806 60835157 ~ 60850501 (-) False LOC110493006
XM_021567381.2 mRNA upstream 94806 60835157 ~ 60850563 (-) True LOC110493006
XM_021567392.2 mRNA upstream 141045 60881396 ~ 60883242 (-) True LOC110493125
XM_021567393.2 mRNA upstream 148442 60888793 ~ 60899520 (-) True zgc:172145
XM_036952293.1 mRNA upstream 303902 61044253 ~ 61059973 (-) True LOC110493151
TU191049 other downstream 56930 60678723 ~ 60679041 (-) True G167723
TU190177 other downstream 186792 60540189 ~ 60549179 (-) True LOC110492890
TU190135 other downstream 220449 60515226 ~ 60515522 (-) True G166877
TU190051 other downstream 329163 60402348 ~ 60406808 (-) True G166794
TU189774 other downstream 815641 59919878 ~ 59920330 (-) True G166541
TU191197 other upstream 234411 60974762 ~ 60975021 (-) True G167866
TU191365 other upstream 514161 61254512 ~ 61256015 (-) True G168021
TU191382 other upstream 550788 61291139 ~ 61300092 (-) True LOC110493186
TU191442 other upstream 750083 61490434 ~ 61491671 (-) True G168078
TU191507 other upstream 774886 61515237 ~ 61515656 (-) True G168141

Expression Profile