RNA id: TU190444


Basic Information

Item Value
RNA id TU190444
length 664
lncRNA type read_through
GC content 0.38
exon number 2
gene id G167164
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60856592 ~ 60907513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatggactcactctgtgtgcattaatagtgtttaacattatttttgagtgactacctcatctctgtaccccacacatacaattatctgtaaggtccctcagtcaagcagtggttttcaaacacagattcaactacaaagaccaaggaggttttccaatggcttgcaaagaagggtacctattggtAAAATGTCTCTTATAATAATGCGTGAGTTAGATTTAAGTAGCTTAACATCTCTTATGCAGGCAATGGGACAATGGTCACTGAACTCATTAGAAATGCCATTGTCTGTAAACTTATGAGGGGCATTAGTTAGAATAATTTCTAAAAGAGTCCATATTTCAGTGTGTTTAAAATTGGGGGGAGTTTATTTAGTTATCAGATTAGTTAGATTTAGCTCAGTACACATTTTTCAGCCTATCAGATACTGCCATCAACCAATCCAGATTAAGATCACCCACTATTAATAATTCGGATTTAGCATAGTTATACAGCAGGTCAGACAATTTGCTAAGAGCACATTAAGTGGCCGAGGGAGGGCGATGTTGTTGTTGATCCACAGTGTCATGGAGAATAAGGGTCTAATAGCCCAGGTTCAGTCTCAATGCATTAGCCAATCATTTATACATACACTAGACGACTAACAGGGGGCACTGTTTTGAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190416 lncRNA upstream 27563 60800447 ~ 60829029 (+) True G167137
TU190323 lncRNA upstream 186879 60669512 ~ 60669713 (+) True G167059
TU190285 lncRNA upstream 238540 60617769 ~ 60618052 (+) True G167025
TU190250 lncRNA upstream 250730 60605591 ~ 60605862 (+) True G166991
TU190166 lncRNA upstream 307035 60549349 ~ 60549557 (+) True G166907
TU190479 lncRNA downstream 13603 60921116 ~ 60921322 (+) True G167198
TU190485 lncRNA downstream 28740 60936253 ~ 60936489 (+) True G167204
TU190486 lncRNA downstream 29255 60936768 ~ 60936995 (+) True G167205
TU190500 lncRNA downstream 53584 60961097 ~ 60961377 (+) True G167219
TU190508 lncRNA downstream 67478 60974991 ~ 60975297 (+) True G167227
XM_036952224.1 mRNA upstream 9617 60781715 ~ 60846975 (+) False LOC110493043
XM_036952234.1 mRNA upstream 9617 60781715 ~ 60846975 (+) False LOC110493043
XM_036952240.1 mRNA upstream 9617 60781715 ~ 60846975 (+) False LOC110493043
XM_036952229.1 mRNA upstream 9617 60781716 ~ 60846975 (+) False LOC110493043
XM_036952235.1 mRNA upstream 9617 60781718 ~ 60846975 (+) False LOC110493043
XM_021567396.2 mRNA downstream 92064 60999577 ~ 61091420 (+) False LOC110493150
XM_036952286.1 mRNA downstream 92066 60999579 ~ 61091420 (+) True LOC110493150
XM_021567465.2 mRNA downstream 276330 61183843 ~ 61191849 (+) False LOC110493175
XR_005037411.1 mRNA downstream 350203 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA downstream 350206 61257719 ~ 61259025 (+) True LOC118941124
TU190136 other upstream 340712 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 903427 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2640209 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 2924601 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 3802950 57048314 ~ 57053642 (+) True G162130
TU190578 other downstream 155080 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 324683 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 624076 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 819446 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 972257 61879770 ~ 61880424 (+) True LOC118936783

Expression Profile