RNA id: TU190485


Basic Information

Item Value
RNA id TU190485
length 237
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G167204
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60936253 ~ 60936489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagctatcttgaagcatgtggggacaacagactgggatagggagcgattgaatatgtccatatgTCCATAGAAATTGGTAGAcctctggttcattcttgggataaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagtttgcaagtataaataccatgggaccacgcagccatcataccgctcaggaaggagacgcgttctgtctctctagagataaacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190479 lncRNA upstream 14931 60921116 ~ 60921322 (+) True G167198
TU190444 lncRNA upstream 28740 60856592 ~ 60907513 (+) True G167164
TU190434 lncRNA upstream 45128 60841661 ~ 60891125 (+) True G167154
TU190416 lncRNA upstream 107224 60800447 ~ 60829029 (+) True G167137
TU190323 lncRNA upstream 266540 60669512 ~ 60669713 (+) True G167059
TU190486 lncRNA downstream 279 60936768 ~ 60936995 (+) True G167205
TU190500 lncRNA downstream 24608 60961097 ~ 60961377 (+) True G167219
TU190508 lncRNA downstream 38502 60974991 ~ 60975297 (+) True G167227
TU190532 lncRNA downstream 59664 60996153 ~ 60996358 (+) True G167245
TU190597 lncRNA downstream 167246 61103735 ~ 61104351 (+) True G167306
XR_005034528.1 mRNA upstream 60816 60873225 ~ 60875437 (+) True LOC118937285
XM_021567389.2 mRNA upstream 69808 60851418 ~ 60866445 (+) False LOC110493059
XM_021567396.2 mRNA downstream 63088 60999577 ~ 61091420 (+) False LOC110493150
XM_036952286.1 mRNA downstream 63090 60999579 ~ 61091420 (+) True LOC110493150
XM_021567465.2 mRNA downstream 247354 61183843 ~ 61191849 (+) False LOC110493175
XR_005037411.1 mRNA downstream 321227 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA downstream 321230 61257719 ~ 61259025 (+) True LOC118941124
TU190389 other upstream 69798 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 69798 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 420373 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 983088 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2719870 58215677 ~ 58216383 (+) True G163660
TU190578 other downstream 126104 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 295707 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 595100 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 790470 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 943281 61879770 ~ 61880424 (+) True LOC118936783

Expression Profile