RNA id: TCONS_00028406


Basic Information

Item Value
RNA id TCONS_00028406
length 4255
RNA type mRNA
GC content 0.39
exon number 14
gene id XLOC_014293
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43579786 ~ 43603932 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATGAACACGCCTCTAAAAACAGCACACTCGCCTTTCGATTCACACAGAAGCTAGAAAAGCGTGCAGTTGTTTCTGGTGGTCTTTTCAGCACTCCGGTTATGCTTTCTTCCAGCTGCCCAGCAGGTGGGCACAGTCGCCTGTACAACTCCTTGCGTTCATATCTGGACAATCAGAGCCGAGCACAGCCCATCATTGGTCTAAACTCCATCACTGAGGTGCTGACACACAGACATCCTGCAGTTTACTTCTGTGATGTTTGCTTTCTGAGAATAACCAAGGCTGACGTTAGAAACCACATCATGGGCAGCATTCACAAATACAATTACACTaAATCGCTTCATGAGCATGGATGGAGATCTGACACAGACCTGACTCTTCTGGCTCGCCATTTAATGGAAATTGCAAAAATGGTTGAAAAGAAAGAGGGAACAGGAGATATTCAGGTTCTGTGTGTGGATGAAGTTGTCTACAAGGAGATCACCTCAGCTCCTCTCCCTGACGCTTTTGCTCAGATGAAAGAGATAAAGAAGCAACCAAAGCCTAATGCACGGGATTTACACACAGTTCAACAGAGCCAATCAGAAGGCAATGGAACCAAAGTTGAATGGCAGCAGATGTCTGGGAACGTGGATGGGAATGGACATCGTTCCACTTTGTATCCAACCCATTATGTGTCCACTATACCATCAAAATGTCCAGCTGATGTTGAACCTCAGACAGTCTCAACCAGGCCAGCACCAAATGCGTTGATCCCTAGTGTCAAACCATTACTCATATGCCAGAAAAAATCTACACATAACAGTCTTGTGGATCCACATGTTTCATCAAGAATTCCTGTTCTGGGAAGTTTCATCAGCCAACACGTAAGTCAGGATCAACCACACAGAAACCAGAGTTTTCAAACATACATGTCATCCGAAAACCAGTGTTTAACTCAAGTGTGGAGAGTTTCATCAGTAAGACCACCAACACATTGGAGCCCAGTCGGACCTCCTTGCCGGAACTACATAGTGTGTTCTGATGAAGACAACAGGAACACAGTCATGCAGTCATTTGGAGTTGGTTATGAAACCCATGCGCTGCGTTTAGCTCAAACCACTCCATACCAAACACCATCTTATACTGTGAGCCACAATGTACCAGAGATAGCCCAGGATTTAACCTATGAATATTTGAGAAAGGAAAGCTCATGTAATGGTCTGGAGCCACGCAGTGATGTGAAGTCCACCAGTTTAATGAAGCCCCACAGTATTGGTGTGTTGGAATCTGCTGTAATGCATCCAAATCAGTCACATGATCAGGCGTATTCACAGGAGCCAATCAACAACAACAGTTGGGAAGCACATGTGGAACAAGAAAACAAATATCTGATGTCACAAAACCCAATTGCCCAGTTCTCTCAGACTCCCCAACGCACCTCAGATGTGGCTAATGTCAACCACAGTGGTCAAAAGCCTCTTATAGGTCTGCAAGCTGTTATTAAGTGCCAGTGCGTGCTGGGGAATGCACATCCGTGTTTTTACCTGTGCCAGGTGTGTTCTGTAAAGAtaaggaagagaaaaaaaataatcaagcaCCTGATTAACCCTGACCACCAGAGAAACTACTTGAAAGCTCACCATCCGGAGCTCTTGCTTAAAAAGTCCAAACCAGGCCTTACAATAAAGCAGCTTGAAGAGATCGCTCTCCAGCTGGAGAAAAAGGACGGAAGGCCACATATAAAGGTGATGAACTTGCCTGTTCATATCTTTAATGATATATTGCAGAAGGATTATCAGAGCTGTTTGTGTGTGGTGAACAGTGGAGTTGGTGTGGAGTGGACAACAAATCTGTTCTCTTTCAATGAAGGAAATGACAGAATAACAGGTCCCATTCCAACTCTCAATCGTCCAGCAGAATGTATCCCTCCTCCTTCAAAGAAACGTCCCATTGAAGATCAAGATGAAGCTCCAACTTGTGAGatgcacaaaaaaataaagaccGAAAATCCTGACATGCCTAACACCAGTGCTAATGAAGTAAAGAAGACTGTGTTTAAGGTAAGCCTGTCTCTGCAGGCTGGACCCCCCATTGTCATCGAGAGAGCACCTCTAAAAGACAAGACCACCATAGCGCCAGAGATCGAAGAGCAAAACACACGTTCTCAGCTTTGCATTTACGGCTGTCCACACTCAGTCGACAACACCACACAGCAGGAACTCCTTCACACGGACAACCACACACTGACGGCTACAGACTCTGAGCAGCTCGTGATTCCAGCTCAGTTTGACCACACGGAGCTGTTCAGTAGTCAAACTGAGCGGTCTCAGATGCTGGAGgactgtggtccagtggtcactGTGCAGCGTGCTGATTGGCCGGAGCAGAATTATTGGGACTTCAGAAACAGCCAATGGCAGAGCAGAGATGCAGGTGCTCACGCTGAGTGTGCAGGGTACATGCAGTACTGGTGGTGATTCTGAGCCTTCGAGAGAACAAATAATACAAGGACATTTGGCAGAGGATGCAGCAAACCATTTTGCTAAATAATTGAGTCCAAATAGTACAACTTCAGATTTTAATCAGATCAATTTACGTGAAGTTTTCATTAGTGTACTTAATTTGGCCTTCTCCATCAAAGTGATGGTGATTATGTATTATTAGTTTGCATGTATATACAGTAGTACATGTATACATGCATATGTGATGGTGTCataaatgtatgcatatatatatgtatatacatgcatacatatgacACCAACCCAAGCATGTATACGGTATGTATATGTGTACTACATAAACGTGTGTACATGTAATGCATAAACGATATATAtgcgcacatacatataaatgtatacaaacacacatttgagtgtgtgtgtgtgtatatatttagatAGCATTGCTGTTTTGTAGTAAACAGAAacatataaagagttcagatgcaaaaaaactctaaatgagcattttttcCTCAGTCTCCTATGTTTATATGCTGTCATTggactttaaaggcaatgaaaataacatattcaTCACCATAAAAGTAAAACGTATAAaactacacagaaaaaaaaatagaaaaatgctaattttagaagatttatgatggcatttagaggctttCGCATCTGCTCTCTTCTTAAATCCTCTGTGTTCCCAGTTTGTTTGTGTAAATAGTAAATATACCTGTTAATTTGCATTCAGTAGCATTAACtgtcattgcaatattttttccaGATATAAGCATACATTTACAATTTGGAGAAAAAAGTTGCTCATTTAGTTGCAGGATTAAGCAAACAAAATCTTAATCTTAATAATCCCTTCTCTGAGAACaacaacatttattaaaacaaaatcaaaaaggtTTTCCTAAACcagaatcattttaaaaagtgatgGATTGGTAATCAGCACCAGCTACTGTAGATAAAGAAACATAATAAAGTAAGAAAAATACCCCTCAAACATTAATTAATAGCTTTTTCACATAATTGTTTTTGCCTTTCAATTTTTGTTCCCCAGAACGGCTTCATTTTTTTAAGTGCGctattttttaagtattatttagCAGAATCGTTTAGTTgctattacatttacatttagttaagGTATATGCATATTTGGgttcaaaaattatattttgtttggaGAACTATATATAAAAcaagttaacatttatttatatagagtGAGCGTGTTGCTGTTTACTAGTTAACAAATGCAAGTTTGTTACCAATGACCATTAACAGATGGTCAGATATACCAGTTCCTTTTCATATTTTGAAGCATTAATTCCTTTATCTCTGGTACAGAACTCTGCAAATGAGATGTCAACTCTATTTTTAGAAGATTTGAAGAAAATTTAGTTTATATGCATTCATAAGCTAAGCTAAAGTTATGTTGTTAttagtttaaatgttaaatactTTTCATTCACCTGGTTTGAAGTTAGCAGCAGCACTTGGAagtgcattttctttctttcaaagTTATAGTTATCGAATGTGTttcaaacagacagacaggcaacACAGATtagcttttgttgttttgttaatttcacTGGTTTTATTACTGAACATGTTCATATTGTTGTTATACCAAGAGTAGATGTTTTGAGAATCAGCCAATttcttaagttttatttttttgtcgtgGCTGACAGAACTGACTTTAAAGTGTTAAATGTGAAATCATTTGTATTATAACTGATTATTTTAACATCAAATACATACTtctttaataaaatgtgtattttcacAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-396 No description available

Ensembl:

ensembl_id ENSDART00000138404

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030040 lncRNA upstream 30775 43546647 ~ 43549011 (+) False XLOC_014291
TCONS_00030039 lncRNA upstream 30775 43546647 ~ 43549011 (+) True XLOC_014291
TCONS_00028400 lncRNA upstream 155641 43420765 ~ 43424145 (+) True XLOC_014287
TCONS_00030038 lncRNA upstream 328592 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028378 lncRNA upstream 499948 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00028415 lncRNA downstream 112038 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00030041 lncRNA downstream 183071 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00030042 lncRNA downstream 183210 43787142 ~ 43790716 (+) True XLOC_014301
TCONS_00030043 lncRNA downstream 196900 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA downstream 197245 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00028405 mRNA upstream 7488 43563179 ~ 43572298 (+) True XLOC_014292
TCONS_00028404 mRNA upstream 36658 43523690 ~ 43543128 (+) True XLOC_014290
TCONS_00028403 mRNA upstream 64390 43504480 ~ 43515396 (+) True XLOC_014289
TCONS_00028402 mRNA upstream 79487 43439457 ~ 43500299 (+) True XLOC_014288
TCONS_00028399 mRNA upstream 155558 43396861 ~ 43424228 (+) False XLOC_014287
TCONS_00028408 mRNA downstream 324 43604256 ~ 43605652 (+) False XLOC_014294
TCONS_00028409 mRNA downstream 325 43604257 ~ 43611880 (+) False XLOC_014294
TCONS_00028410 mRNA downstream 711 43604643 ~ 43606158 (+) True XLOC_014294
TCONS_00028412 mRNA downstream 65190 43669122 ~ 43707261 (+) False XLOC_014296
TCONS_00028413 mRNA downstream 80444 43684376 ~ 43706732 (+) True XLOC_014296
TCONS_00028401 other upstream 127839 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 498726 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 501907 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 664245 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 844501 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028411 other downstream 61459 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 405541 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 1904933 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 2639688 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 3695234 47299166 ~ 47309383 (+) False XLOC_014336

Expression Profile

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