RNA id: TU190466



Basic Information


Item Value
RNA id TU190466
length 963
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G167185
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61290149 ~ 61292412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCAGttagtgagtttaataataatgaacaatacaaaacaagagaaGCACCTGACATGGAAACATAAACAATACTACCTGACGACTACTAACAGAAGATTACTATATAAAAAGGGTGAGTAATCAAGGGAGTAATGAAGACCAGGTGTGACTGAGatacaggtgtgcataatgagggTTGCCTGGTGTGTGtaaagatgggttgccaggaTCGGTGGTTAGTAAACTGGCGACGTCGAGCACCAGTAGAGGTGACAGAAGTTTATACTGACTATagcgtctcaaaatggacaaacagtactattgctgcttttttcttgtttttcaagtgaattttcacctaaaatgacatacccaaatctaactgcctatagctcaggcactgaagcaaggatatgcatattcttgataccatttgaaatgtcatgacgttggcctggggggtaggtttatgacagtcataaatacctcttcccccctttttcctctctctaccctactgagggtacatttgcaaaacccttggctAACCTAGAGAGTCTGGGAACATTAGTAGGTAGGGAGAGTTaccggattcacatggaattgttgttcgatttaaatgtttgaatattaaattatttgtgatgggatgaaatgtgattttagcttctaaaatgtgagatgtgggttttcataacATAGGGCTGCTCACTtagtggcccgcccacgtgaagagacagagctactgtaaattggacagtgcagttagattaacaagaatgtatgctttctgacaatatcagacatgtctatgtcctgggaaatgttcttgttacttacaacctcatgctaatcgcattagcctacattagctcaaccgtcccatggaTGGGACACCGATCCAGAAGAAGTTTTAATCCCATAAAGAATGAGAGACAGTAAATTGGTCTTCCTTTGACCTGGGGTTGATAACCGCTTTTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU190704 lncRNA upstream 28377 61261483 ~ 61261772 (+) True G167402
TU190699 lncRNA upstream 39067 61250863 ~ 61251082 (+) True G167397
TU190627 lncRNA upstream 45660 61238410 ~ 61244489 (+) True G167328
TU190681 lncRNA upstream 58838 61231086 ~ 61231311 (+) True G167381
TU190625 lncRNA upstream 70510 61216658 ~ 61219639 (+) True G167326
TU190760 lncRNA downstream 89666 61382078 ~ 61415147 (+) True G167455
TU190795 lncRNA downstream 126388 61418800 ~ 61419020 (+) True G167487
TU190801 lncRNA downstream 132554 61424966 ~ 61425207 (+) True G167493
TU190802 lncRNA downstream 134765 61427177 ~ 61427482 (+) True G167494
TU190827 lncRNA downstream 205077 61497489 ~ 61498830 (+) True G167509
XR_005037411.1 mRNA upstream 31124 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA upstream 31124 61257719 ~ 61259025 (+) True LOC118941124
XM_021567465.2 mRNA upstream 98300 61183843 ~ 61191849 (+) False LOC110493175
XM_021567396.2 mRNA upstream 198729 60999577 ~ 61091420 (+) False LOC110493150
XR_005037416.1 mRNA downstream 18916 61311328 ~ 61312547 (+) False LOC118941126
XR_005037417.1 mRNA downstream 18916 61311328 ~ 61312547 (+) True LOC118941126
XM_021567588.2 mRNA downstream 184699 61477111 ~ 61479816 (+) True LOC110493325
XM_021567598.2 mRNA downstream 206684 61499096 ~ 61509316 (+) False LOC110493335
XM_021567607.2 mRNA downstream 206684 61499096 ~ 61509316 (+) True LOC110493335
TU190618 other upstream 57604 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 215558 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 423694 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 423694 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 774269 60515632 ~ 60515880 (+) True G166878
TU190863 other downstream 239177 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 434547 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 587358 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1492946 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2528049 63820461 ~ 63830320 (+) True G170131

Expression Profile