RNA id: TU190801


Basic Information

Item Value
RNA id TU190801
length 242
lncRNA type intronic
GC content 0.52
exon number 1
gene id G167493
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61424966 ~ 61425207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTCATGACTGTCCACGAGAATCCAAATAAGTCAGATCAGGTTTACTATGAATAACGTCTATCAGACCCCTCAAACCCGTAGAGGGGGAAGGAAAGAACTAGTGGGGTTTAACAACTCACATCCTGTTGTAAATCAAAGGAGAAGATCCAGGCCTGTGCTCTCAAGATTTACCAAAGGAATGTGCTTAGTCTCAACAGACTTTTTCCCACTGAAACTCTAATACATTCAAAAGCAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190795 lncRNA upstream 5946 61418800 ~ 61419020 (+) True G167487
TU190760 lncRNA upstream 9819 61382078 ~ 61415147 (+) True G167455
TU190466 lncRNA upstream 132554 61290149 ~ 61292412 (+) True G167185
TU190704 lncRNA upstream 163194 61261483 ~ 61261772 (+) True G167402
TU190699 lncRNA upstream 173884 61250863 ~ 61251082 (+) True G167397
TU190802 lncRNA downstream 1970 61427177 ~ 61427482 (+) True G167494
TU190827 lncRNA downstream 72282 61497489 ~ 61498830 (+) True G167509
TU190854 lncRNA downstream 87014 61512221 ~ 61512476 (+) True G167535
TU190858 lncRNA downstream 93958 61519165 ~ 61519535 (+) True G167539
TU190851 lncRNA downstream 95276 61520483 ~ 61525083 (+) True LOC110501762
XR_005037416.1 mRNA upstream 112419 61311328 ~ 61312547 (+) False LOC118941126
XR_005037417.1 mRNA upstream 112419 61311328 ~ 61312547 (+) True LOC118941126
XR_005037411.1 mRNA upstream 165941 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA upstream 165941 61257719 ~ 61259025 (+) True LOC118941124
XM_021567465.2 mRNA upstream 233117 61183843 ~ 61191849 (+) False LOC110493175
XM_021567588.2 mRNA downstream 51904 61477111 ~ 61479816 (+) True LOC110493325
XM_021567598.2 mRNA downstream 73889 61499096 ~ 61509316 (+) False LOC110493335
XM_021567607.2 mRNA downstream 73889 61499096 ~ 61509316 (+) True LOC110493335
XM_036934053.1 mRNA downstream 95278 61520485 ~ 61525531 (+) False LOC110501762
XM_036952487.1 mRNA downstream 100076 61525283 ~ 61535728 (+) False LOC110510683
TU190618 other upstream 192421 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 350375 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 558511 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 558511 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 909086 60515632 ~ 60515880 (+) True G166878
TU190863 other downstream 106382 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 301752 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 454563 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1360151 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2395254 63820461 ~ 63830320 (+) True G170131

Expression Profile