RNA id: TU191442


Basic Information

Item Value
RNA id TU191442
length 1169
RNA type TUCP
GC content 0.40
exon number 2
gene id G168078
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61490434 ~ 61491671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGGGCGTGATCAGTTTTATCATTAACATCTGAGTATGATTCGATCATTCATCTGCAAAAGATAAATCCAATTAGTGTTTTAGATAGAACCAATAGCCGGTAGTGTCCGGTGAGGTTAAAATCCAATAGCTGGTAGTGTCCGGTGAGGTGTCTACAATAGATTAATGTATGATTAAGATATGTTGGACTGAAAAGTCCGCTTTGTGTTGTGGCCAGAATGAATGTGATAAATGTACTAATGTGTGATGTCATAGAATAAGATGTTCTAATTGAACAATTGTGTTTAAAACTATGTCCATGTAATAATATTTGTGTGTTGACTATAGACTAAATGTAAACGGCGTTTCACAAGTCCCtgatattattaccattatttaAAATTATTGTGAGCAAAGTATTTcctaaattcaaaaaaaaaaaaaaaatctattatcCAAATTGTTTAAACATAGTTTATGTTGATAATCATTTCCTGAATTGGTGGCTCGTGTTTAATCATTAAAACATTATTGTTTAAAATTCTGGATATATGACGGAGAGGCTCTGAGTTAAGACAGAGTACGAGTAATAGTGTCTCCTAAGAATACATCACTGGCACGAGCCAGTGACGGGCTAAGTATATCCaaagagtgtacaaaatatttctaaaaaaaaacACGTCAAATCAGCACCtaagacaggtggaggagaggtttgGCATTACACACAAGTTTGGCTCTGTGTATAGGCCGCAATCGCAGGGCCTTGTGGAACGCTGTAATCAAAATCtgaaagctaagatagctaaagtgTGTGCAGGGACACATCTTTCACCCCATGAAATAATGACAGGTAGAGTAATGCCAGGGCCACCAAgagagggaggtcatatgcccccTCTTGATGTGCACcaaatagggatgtctgactatGTGAAGAAATTGACGGAATTGTCTGCAGCTCTCTCCAAACAGATACACCGTGTCGCAGAGAGGGAGCTGACTGACGTCCCGGAACAACCAAGGGTAAAAGTTGGGGACTGGGTAAGGATCaaggtccacaagagaaagtgggctgatcccaggtggactggaccgtacgaagtgaaggaggttacttcacactcagtccaggtcaaaggtaaattaGGCGCACCTTGGCACCACCTGACACATTGTACACCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191474 lncRNA downstream 59411 61430713 ~ 61431023 (-) True G168108
TU191465 lncRNA downstream 73543 61416663 ~ 61416891 (-) True G168099
TU191393 lncRNA downstream 128914 61307147 ~ 61361520 (-) True LOC118941125
TU191379 lncRNA downstream 195514 61290149 ~ 61294920 (-) False LOC110493186
TU191386 lncRNA downstream 221416 61268566 ~ 61269018 (-) True G168033
TU191495 lncRNA upstream 3561 61495232 ~ 61495725 (-) True G168129
TU191498 lncRNA upstream 6736 61498407 ~ 61498825 (-) True G168132
TU191499 lncRNA upstream 16463 61508134 ~ 61509299 (-) True G168133
TU191505 lncRNA upstream 21230 61512901 ~ 61513251 (-) True G168139
TU191509 lncRNA upstream 27196 61518867 ~ 61519213 (-) True G168143
XM_021567539.2 mRNA downstream 26132 61436215 ~ 61464302 (-) False LOC110493282
XM_021567560.2 mRNA downstream 26132 61436215 ~ 61464302 (-) False LOC110493282
XM_021567566.2 mRNA downstream 26132 61436215 ~ 61464302 (-) False LOC110493282
XM_021567574.2 mRNA downstream 26132 61436215 ~ 61464302 (-) False LOC110493282
XM_021567577.2 mRNA downstream 26132 61436215 ~ 61464302 (-) True LOC110493282
XM_036952527.1 mRNA upstream 675747 62167418 ~ 62217631 (-) False mon2
XM_036952531.1 mRNA upstream 675747 62167418 ~ 62217631 (-) False mon2
XM_036952538.1 mRNA upstream 675747 62167418 ~ 62217631 (-) False mon2
XM_036952541.1 mRNA upstream 675747 62167418 ~ 62217631 (-) False mon2
XM_036952533.1 mRNA upstream 675747 62167418 ~ 62217632 (-) False mon2
TU191382 other downstream 190342 61291139 ~ 61300092 (-) True LOC110493186
TU191365 other downstream 234419 61254512 ~ 61256015 (-) True G168021
TU191197 other downstream 515413 60974762 ~ 60975021 (-) True G167866
TU191030 other downstream 750083 60735971 ~ 60740351 (-) True G167706
TU191049 other downstream 811393 60678723 ~ 60679041 (-) True G167723
TU191507 other upstream 23566 61515237 ~ 61515656 (-) True G168141
TU193660 other upstream 1655103 63146774 ~ 63150851 (-) True LOC110493507
TU194598 other upstream 2467852 63959523 ~ 63963821 (-) True LOC110501772
TU194766 other upstream 2674292 64165963 ~ 64168398 (-) True tmem117
TU195797 other upstream 3593901 65085572 ~ 65086188 (-) True G172141

Expression Profile