RNA id: TU190921


Basic Information

Item Value
RNA id TU190921
length 360
lncRNA type read_through
GC content 0.40
exon number 2
gene id G167599
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61674301 ~ 61729889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaaactgcctgctactcaggcccagaagctaatatatgcatagtattagtagatttggatagaaaactctccgacgtttctaaaactgtttgaatgatgtttgtgagtataacagaactcatatggcaggtgaaaacctgagaataatccaaccaggaagtggggaaTCTgatgtttgtagtttttcaactcctTGCCTTTCTACTATACAGTctaaatggggtcatattgcacttaccaataaggcttccactagatgtcaacagtctttagaacaatGTTTctggcttctactatgaagggggagcgaataagagctgtttgactaagaggTCTGGCAGAAGGCCATGAGCTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190851 lncRNA upstream 149218 61520483 ~ 61525083 (+) True LOC110501762
TU190858 lncRNA upstream 154766 61519165 ~ 61519535 (+) True G167539
TU190854 lncRNA upstream 161825 61512221 ~ 61512476 (+) True G167535
TU190827 lncRNA upstream 175471 61497489 ~ 61498830 (+) True G167509
TU190802 lncRNA upstream 246819 61427177 ~ 61427482 (+) True G167494
TU190938 lncRNA downstream 26326 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA downstream 64691 61794580 ~ 61794870 (+) True G167622
TU190978 lncRNA downstream 173098 61902987 ~ 61903742 (+) True LOC118937286
TU191648 lncRNA downstream 207159 61937048 ~ 61937284 (+) True G168279
TU191649 lncRNA downstream 207597 61937486 ~ 61937775 (+) True G168280
XM_036952493.1 mRNA upstream 57842 61611959 ~ 61616459 (+) True LOC110517167
XR_005037426.1 mRNA upstream 106449 61538865 ~ 61567852 (+) True LOC118941130
XM_036952487.1 mRNA upstream 138573 61525283 ~ 61535728 (+) False LOC110510683
XM_036934053.1 mRNA upstream 148770 61520485 ~ 61525531 (+) False LOC110501762
XM_021567607.2 mRNA upstream 164985 61499096 ~ 61509316 (+) True LOC110493335
XR_005037429.1 mRNA downstream 28352 61758241 ~ 61759129 (+) True LOC110512213
XM_021564510.2 mRNA downstream 115507 61845396 ~ 61850758 (+) True LOC110491157
XM_036952517.1 mRNA downstream 132357 61862246 ~ 61870358 (+) True LOC118941134
XM_036934069.1 mRNA downstream 140504 61870393 ~ 61880657 (+) False LOC118936783
XM_036934623.1 mRNA downstream 173442 61903331 ~ 61905185 (+) False LOC118937286
TU190863 other upstream 141974 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 441756 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 599710 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 807846 60851432 ~ 60866455 (+) False LOC110493059
TU190972 other downstream 149881 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1055469 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2090572 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 2143359 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3801257 65531146 ~ 65536787 (+) True map1lc3b

Expression Profile