RNA id: TU191660



Basic Information


Item Value
RNA id TU191660
length 310
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G168291
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61945109 ~ 61945418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaatagtactgttgaaattgatatatgccatagaagtgcagccttgtgcattttcaatacagtaactgtcatccaaactgtagcctaagtttacatcaggtaatactgtcaaagtacacagttacattgacaacatgcctaaacattttgacgaccttgttcgtgaacaatgactcaatgacttatcattctgatgacactgatgacactgacttgcctagtaaaataaaaggtGGGACAATAGTAATGTTATCGTAATTAACTCTTTGGATTGGGAGTGGGGTTGGGGGATGACAGCCAGGCACTTATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU191649 lncRNA upstream 7334 61937486 ~ 61937775 (+) True G168280
TU191648 lncRNA upstream 7825 61937048 ~ 61937284 (+) True G168279
TU190978 lncRNA upstream 41367 61902987 ~ 61903742 (+) True LOC118937286
TU190938 lncRNA upstream 110464 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA upstream 150239 61794580 ~ 61794870 (+) True G167622
TU191662 lncRNA downstream 786 61946204 ~ 61946444 (+) True G168293
TU191705 lncRNA downstream 46093 61991511 ~ 62038823 (+) True G168335
TU191782 lncRNA downstream 171757 62117175 ~ 62117597 (+) True G168409
TU191837 lncRNA downstream 248737 62194155 ~ 62195468 (+) True G168460
TU191923 lncRNA downstream 370333 62315751 ~ 62315972 (+) True G168539
XM_036952522.1 mRNA upstream 28990 61910943 ~ 61916119 (+) True LOC110491137
XM_036934623.1 mRNA upstream 39924 61903331 ~ 61905185 (+) False LOC118937286
XM_036934069.1 mRNA upstream 64452 61870393 ~ 61880657 (+) False LOC118936783
XM_036952517.1 mRNA upstream 74751 61862246 ~ 61870358 (+) True LOC118941134
XM_021564510.2 mRNA upstream 94351 61845396 ~ 61850758 (+) True LOC110491157
XM_021567628.2 mRNA downstream 112511 62057929 ~ 62062744 (+) True avpr1aa
XM_036952547.1 mRNA downstream 147001 62092419 ~ 62154496 (+) True ppm1h
XM_036952617.1 mRNA downstream 337786 62283204 ~ 62345950 (+) False fbln1
XM_036952598.1 mRNA downstream 337794 62283212 ~ 62369308 (+) False fbln1
XM_036952590.1 mRNA downstream 337796 62283214 ~ 62369308 (+) False fbln1
TU190972 other upstream 64685 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 217655 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 412782 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 712564 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 870518 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 839940 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1875043 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1927830 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3585728 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3648099 65593517 ~ 65640976 (+) False jph3

Expression Profile


TU191660 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

TU191660 Expression in each Bioproject

Bar chart with 15 bars.
TU191660 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.